Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04195

Experiment: m.b. Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04190 and CA264_04195 are separated by 11 nucleotidesCA264_04195 and CA264_04200 are separated by 436 nucleotides CA264_04190: CA264_04190 - peptidase M16, at 966,939 to 968,345 _04190 CA264_04195: CA264_04195 - peptidase M16, at 968,357 to 969,760 _04195 CA264_04200: CA264_04200 - cation-efflux pump, at 970,197 to 971,090 _04200 Position (kb) 968 969 970Strain fitness (log2 ratio) -2 -1 0 1 2 3at 967.436 kb on + strand, within CA264_04190at 967.448 kb on - strand, within CA264_04190at 967.474 kb on - strand, within CA264_04190at 967.506 kb on + strand, within CA264_04190at 967.515 kb on - strand, within CA264_04190at 967.525 kb on - strand, within CA264_04190at 967.542 kb on + strand, within CA264_04190at 967.542 kb on + strand, within CA264_04190at 967.608 kb on + strand, within CA264_04190at 967.608 kb on + strand, within CA264_04190at 967.608 kb on + strand, within CA264_04190at 967.608 kb on + strand, within CA264_04190at 967.617 kb on - strand, within CA264_04190at 967.839 kb on + strand, within CA264_04190at 967.842 kb on + strand, within CA264_04190at 967.906 kb on + strand, within CA264_04190at 967.973 kb on + strand, within CA264_04190at 967.973 kb on + strand, within CA264_04190at 967.978 kb on - strand, within CA264_04190at 968.065 kb on + strand, within CA264_04190at 968.066 kb on - strand, within CA264_04190at 968.066 kb on - strand, within CA264_04190at 968.139 kb on + strand, within CA264_04190at 968.160 kb on + strand, within CA264_04190at 968.161 kb on - strand, within CA264_04190at 968.300 kb on + strandat 968.315 kb on - strandat 968.315 kb on - strandat 968.315 kb on - strandat 968.318 kb on - strandat 968.324 kb on - strandat 968.343 kb on + strandat 968.349 kb on + strandat 968.349 kb on + strandat 968.349 kb on + strandat 968.350 kb on - strandat 968.350 kb on - strandat 968.351 kb on + strandat 968.356 kb on + strandat 968.362 kb on + strandat 968.362 kb on + strandat 968.464 kb on + strandat 968.465 kb on - strandat 968.550 kb on + strand, within CA264_04195at 968.550 kb on + strand, within CA264_04195at 968.550 kb on + strand, within CA264_04195at 968.551 kb on - strand, within CA264_04195at 968.554 kb on + strand, within CA264_04195at 968.554 kb on + strand, within CA264_04195at 968.563 kb on - strand, within CA264_04195at 968.563 kb on - strand, within CA264_04195at 969.029 kb on + strand, within CA264_04195at 969.030 kb on - strand, within CA264_04195at 969.314 kb on + strand, within CA264_04195at 969.320 kb on + strand, within CA264_04195at 969.320 kb on + strand, within CA264_04195at 969.320 kb on + strand, within CA264_04195at 969.321 kb on - strand, within CA264_04195at 969.321 kb on - strand, within CA264_04195at 969.350 kb on + strand, within CA264_04195at 969.351 kb on - strand, within CA264_04195at 969.488 kb on + strand, within CA264_04195at 969.489 kb on - strand, within CA264_04195at 969.608 kb on + strand, within CA264_04195at 969.609 kb on - strand, within CA264_04195at 969.609 kb on - strand, within CA264_04195at 969.650 kb on + strandat 969.758 kb on + strandat 969.845 kb on - strandat 969.857 kb on - strandat 969.873 kb on + strandat 969.874 kb on - strandat 969.875 kb on + strandat 969.880 kb on - strandat 969.883 kb on + strandat 969.883 kb on + strandat 969.884 kb on - strandat 969.895 kb on - strandat 969.898 kb on + strandat 969.921 kb on - strandat 969.932 kb on + strandat 969.932 kb on + strandat 969.933 kb on - strandat 969.942 kb on - strandat 969.990 kb on - strandat 969.995 kb on + strandat 969.997 kb on + strandat 969.997 kb on + strandat 969.997 kb on + strandat 969.998 kb on - strandat 969.998 kb on - strandat 970.002 kb on - strandat 970.199 kb on - strandat 970.204 kb on - strandat 970.263 kb on + strandat 970.263 kb on + strandat 970.263 kb on + strandat 970.263 kb on + strandat 970.263 kb on + strandat 970.264 kb on - strandat 970.353 kb on + strand, within CA264_04200at 970.383 kb on + strand, within CA264_04200at 970.402 kb on - strand, within CA264_04200at 970.492 kb on + strand, within CA264_04200at 970.508 kb on + strand, within CA264_04200at 970.521 kb on + strand, within CA264_04200at 970.522 kb on - strand, within CA264_04200at 970.588 kb on - strand, within CA264_04200at 970.739 kb on - strand, within CA264_04200

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0001 mg/ml
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967,436 + CA264_04190 0.35 -0.4
967,448 - CA264_04190 0.36 +0.2
967,474 - CA264_04190 0.38 +0.0
967,506 + CA264_04190 0.40 +0.2
967,515 - CA264_04190 0.41 +0.4
967,525 - CA264_04190 0.42 +0.6
967,542 + CA264_04190 0.43 -0.4
967,542 + CA264_04190 0.43 -1.0
967,608 + CA264_04190 0.48 +0.3
967,608 + CA264_04190 0.48 -0.4
967,608 + CA264_04190 0.48 -0.4
967,608 + CA264_04190 0.48 +1.6
967,617 - CA264_04190 0.48 -0.3
967,839 + CA264_04190 0.64 -0.4
967,842 + CA264_04190 0.64 +3.4
967,906 + CA264_04190 0.69 -0.3
967,973 + CA264_04190 0.73 -1.4
967,973 + CA264_04190 0.73 -0.0
967,978 - CA264_04190 0.74 +0.8
968,065 + CA264_04190 0.80 -0.1
968,066 - CA264_04190 0.80 -0.2
968,066 - CA264_04190 0.80 -0.5
968,139 + CA264_04190 0.85 -0.2
968,160 + CA264_04190 0.87 +0.2
968,161 - CA264_04190 0.87 -1.4
968,300 + -1.4
968,315 - +0.6
968,315 - -0.2
968,315 - +0.0
968,318 - -0.4
968,324 - -0.5
968,343 + +1.4
968,349 + -1.4
968,349 + -0.2
968,349 + -0.1
968,350 - -0.4
968,350 - +0.6
968,351 + +0.0
968,356 + -0.0
968,362 + +0.0
968,362 + -0.6
968,464 + -1.1
968,465 - +0.2
968,550 + CA264_04195 0.14 +0.6
968,550 + CA264_04195 0.14 -0.8
968,550 + CA264_04195 0.14 -0.5
968,551 - CA264_04195 0.14 +0.2
968,554 + CA264_04195 0.14 -0.4
968,554 + CA264_04195 0.14 +0.2
968,563 - CA264_04195 0.15 -1.6
968,563 - CA264_04195 0.15 -1.4
969,029 + CA264_04195 0.48 -0.4
969,030 - CA264_04195 0.48 -0.4
969,314 + CA264_04195 0.68 -0.5
969,320 + CA264_04195 0.69 -1.0
969,320 + CA264_04195 0.69 -0.6
969,320 + CA264_04195 0.69 -0.3
969,321 - CA264_04195 0.69 -0.5
969,321 - CA264_04195 0.69 -0.4
969,350 + CA264_04195 0.71 -0.1
969,351 - CA264_04195 0.71 +0.6
969,488 + CA264_04195 0.81 -0.4
969,489 - CA264_04195 0.81 +1.6
969,608 + CA264_04195 0.89 -0.6
969,609 - CA264_04195 0.89 +0.3
969,609 - CA264_04195 0.89 -0.6
969,650 + -0.1
969,758 + +0.6
969,845 - +0.9
969,857 - -0.4
969,873 + -0.2
969,874 - -1.8
969,875 + +1.6
969,880 - +0.4
969,883 + +0.3
969,883 + -0.9
969,884 - -1.1
969,895 - -0.1
969,898 + -1.2
969,921 - -0.2
969,932 + +1.2
969,932 + -0.3
969,933 - -0.1
969,942 - +0.6
969,990 - +0.9
969,995 + -0.1
969,997 + -0.5
969,997 + +0.1
969,997 + -1.7
969,998 - +0.5
969,998 - +0.6
970,002 - -0.3
970,199 - +0.6
970,204 - -0.3
970,263 + +0.3
970,263 + +0.9
970,263 + +2.2
970,263 + -0.7
970,263 + -0.1
970,264 - +0.0
970,353 + CA264_04200 0.17 +1.5
970,383 + CA264_04200 0.21 -1.1
970,402 - CA264_04200 0.23 -0.4
970,492 + CA264_04200 0.33 +0.0
970,508 + CA264_04200 0.35 +0.1
970,521 + CA264_04200 0.36 +0.2
970,522 - CA264_04200 0.36 +0.4
970,588 - CA264_04200 0.44 +0.9
970,739 - CA264_04200 0.61 +0.3

Or see this region's nucleotide sequence