Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00845

Experiment: m.b. Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00840 and CA264_00845 are separated by 86 nucleotidesCA264_00845 and CA264_00850 are separated by 171 nucleotides CA264_00840: CA264_00840 - phosphoserine aminotransferase, at 178,942 to 180,003 _00840 CA264_00845: CA264_00845 - type II 3-dehydroquinate dehydratase, at 180,090 to 180,536 _00845 CA264_00850: CA264_00850 - site-specific tyrosine recombinase XerD, at 180,708 to 181,607 _00850 Position (kb) 180 181Strain fitness (log2 ratio) -2 -1 0 1at 180.004 kb on - strandat 180.004 kb on - strandat 180.029 kb on - strandat 180.064 kb on + strandat 180.064 kb on + strandat 180.067 kb on + strandat 180.067 kb on + strandat 180.067 kb on + strandat 180.068 kb on - strandat 180.068 kb on - strandat 180.092 kb on - strandat 180.548 kb on + strandat 180.565 kb on + strandat 180.565 kb on + strandat 180.574 kb on - strandat 180.585 kb on - strandat 180.617 kb on - strandat 180.628 kb on - strandat 180.641 kb on + strandat 180.646 kb on - strandat 180.647 kb on + strandat 180.647 kb on + strandat 180.651 kb on + strandat 180.675 kb on + strandat 180.676 kb on - strandat 180.682 kb on + strandat 180.683 kb on - strandat 180.726 kb on - strandat 180.728 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0001 mg/ml
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180,004 - +0.4
180,004 - -0.7
180,029 - -0.8
180,064 + -0.5
180,064 + -1.4
180,067 + +1.2
180,067 + -0.2
180,067 + -0.5
180,068 - -0.9
180,068 - -0.6
180,092 - -0.3
180,548 + -0.1
180,565 + -0.0
180,565 + -2.7
180,574 - +0.2
180,585 - -1.2
180,617 - +0.3
180,628 - -0.3
180,641 + -0.1
180,646 - -0.5
180,647 + -0.5
180,647 + -0.5
180,651 + -0.4
180,675 + +0.4
180,676 - -0.6
180,682 + -0.4
180,683 - +0.1
180,726 - -1.6
180,728 - -2.4

Or see this region's nucleotide sequence