Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00505

Experiment: m.b. Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00500 and CA264_00505 are separated by 560 nucleotidesCA264_00505 and CA264_00510 are separated by 125 nucleotides CA264_00500: CA264_00500 - hypothetical protein, at 111,125 to 113,461 _00500 CA264_00505: CA264_00505 - hypothetical protein, at 114,022 to 114,987 _00505 CA264_00510: CA264_00510 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 115,113 to 115,955 _00510 Position (kb) 114 115Strain fitness (log2 ratio) -1 0 1 2 3at 113.057 kb on + strand, within CA264_00500at 113.075 kb on + strand, within CA264_00500at 113.075 kb on + strand, within CA264_00500at 113.075 kb on + strand, within CA264_00500at 113.075 kb on + strand, within CA264_00500at 113.079 kb on + strand, within CA264_00500at 113.135 kb on + strand, within CA264_00500at 113.251 kb on + strandat 113.252 kb on - strandat 113.252 kb on - strandat 113.254 kb on - strandat 113.286 kb on + strandat 113.286 kb on + strandat 113.344 kb on + strandat 113.394 kb on - strandat 113.394 kb on - strandat 113.429 kb on + strandat 113.433 kb on - strandat 113.447 kb on + strandat 113.447 kb on + strandat 113.447 kb on + strandat 113.448 kb on - strandat 113.490 kb on + strandat 113.491 kb on - strandat 113.506 kb on + strandat 113.575 kb on - strandat 113.576 kb on + strandat 113.577 kb on - strandat 113.577 kb on - strandat 113.577 kb on - strandat 113.585 kb on + strandat 113.613 kb on + strandat 113.663 kb on - strandat 113.663 kb on - strandat 113.664 kb on + strandat 113.664 kb on + strandat 113.664 kb on + strandat 113.665 kb on - strandat 113.665 kb on - strandat 113.668 kb on + strandat 113.668 kb on + strandat 113.669 kb on - strandat 113.670 kb on + strandat 113.670 kb on + strandat 113.678 kb on + strandat 113.678 kb on + strandat 113.678 kb on + strandat 113.679 kb on - strandat 113.679 kb on - strandat 113.679 kb on - strandat 113.849 kb on - strandat 113.925 kb on - strandat 113.971 kb on + strandat 113.972 kb on - strandat 113.986 kb on + strandat 114.033 kb on - strandat 114.090 kb on - strandat 114.177 kb on + strand, within CA264_00505at 114.177 kb on + strand, within CA264_00505at 114.177 kb on + strand, within CA264_00505at 114.195 kb on + strand, within CA264_00505at 114.269 kb on + strand, within CA264_00505at 114.270 kb on - strand, within CA264_00505at 114.270 kb on - strand, within CA264_00505at 114.270 kb on - strand, within CA264_00505at 114.280 kb on - strand, within CA264_00505at 114.301 kb on - strand, within CA264_00505at 114.334 kb on - strand, within CA264_00505at 114.339 kb on + strand, within CA264_00505at 114.347 kb on + strand, within CA264_00505at 114.347 kb on + strand, within CA264_00505at 114.348 kb on - strand, within CA264_00505at 114.348 kb on - strand, within CA264_00505at 114.538 kb on - strand, within CA264_00505at 114.667 kb on - strand, within CA264_00505at 114.671 kb on + strand, within CA264_00505at 114.699 kb on + strand, within CA264_00505at 114.699 kb on + strand, within CA264_00505at 114.699 kb on + strand, within CA264_00505at 114.699 kb on + strand, within CA264_00505at 114.772 kb on + strand, within CA264_00505at 114.784 kb on - strand, within CA264_00505at 114.873 kb on + strand, within CA264_00505at 114.874 kb on - strand, within CA264_00505at 114.906 kb on + strandat 114.907 kb on - strandat 114.933 kb on - strandat 114.989 kb on + strandat 114.989 kb on + strandat 114.990 kb on - strandat 114.990 kb on - strandat 115.025 kb on + strandat 115.067 kb on - strandat 115.067 kb on - strandat 115.095 kb on - strandat 115.955 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0001 mg/ml
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113,057 + CA264_00500 0.83 +0.5
113,075 + CA264_00500 0.83 +0.1
113,075 + CA264_00500 0.83 +0.2
113,075 + CA264_00500 0.83 -1.3
113,075 + CA264_00500 0.83 +2.6
113,079 + CA264_00500 0.84 -1.6
113,135 + CA264_00500 0.86 -1.7
113,251 + -0.7
113,252 - +1.2
113,252 - +0.3
113,254 - -1.2
113,286 + -0.1
113,286 + -0.2
113,344 + +0.3
113,394 - +0.8
113,394 - -0.4
113,429 + +1.0
113,433 - +0.1
113,447 + -0.7
113,447 + +0.5
113,447 + +1.1
113,448 - +0.5
113,490 + +2.8
113,491 - -0.6
113,506 + +0.1
113,575 - -0.3
113,576 + +0.7
113,577 - -0.6
113,577 - +2.3
113,577 - +1.6
113,585 + +0.5
113,613 + -0.1
113,663 - +0.8
113,663 - +0.8
113,664 + -0.7
113,664 + -0.3
113,664 + +0.9
113,665 - +1.8
113,665 - +1.1
113,668 + -0.5
113,668 + +0.8
113,669 - -0.1
113,670 + -0.1
113,670 + -0.2
113,678 + -0.2
113,678 + +0.2
113,678 + +1.3
113,679 - +0.1
113,679 - +0.2
113,679 - -0.4
113,849 - -0.1
113,925 - +1.5
113,971 + -0.4
113,972 - +0.0
113,986 + +0.8
114,033 - -0.2
114,090 - +1.4
114,177 + CA264_00505 0.16 +0.1
114,177 + CA264_00505 0.16 +0.8
114,177 + CA264_00505 0.16 +0.2
114,195 + CA264_00505 0.18 +0.8
114,269 + CA264_00505 0.26 +0.4
114,270 - CA264_00505 0.26 +0.4
114,270 - CA264_00505 0.26 +0.4
114,270 - CA264_00505 0.26 -0.7
114,280 - CA264_00505 0.27 +0.4
114,301 - CA264_00505 0.29 -0.3
114,334 - CA264_00505 0.32 -0.6
114,339 + CA264_00505 0.33 +1.2
114,347 + CA264_00505 0.34 -0.2
114,347 + CA264_00505 0.34 +0.3
114,348 - CA264_00505 0.34 +0.3
114,348 - CA264_00505 0.34 +0.2
114,538 - CA264_00505 0.53 -0.2
114,667 - CA264_00505 0.67 +1.1
114,671 + CA264_00505 0.67 +2.2
114,699 + CA264_00505 0.70 +0.0
114,699 + CA264_00505 0.70 +0.0
114,699 + CA264_00505 0.70 +1.8
114,699 + CA264_00505 0.70 +2.6
114,772 + CA264_00505 0.78 +0.4
114,784 - CA264_00505 0.79 -0.1
114,873 + CA264_00505 0.88 -0.1
114,874 - CA264_00505 0.88 +0.2
114,906 + -0.4
114,907 - +0.2
114,933 - +0.0
114,989 + -0.2
114,989 + -0.0
114,990 - -0.8
114,990 - -0.4
115,025 + -0.3
115,067 - -1.6
115,067 - -0.2
115,095 - +1.2
115,955 + +0.9

Or see this region's nucleotide sequence