Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00425

Experiment: m.b. Fusidic 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00420 and CA264_00425 are separated by 254 nucleotidesCA264_00425 and CA264_00430 are separated by 119 nucleotidesCA264_00430 and CA264_00435 are separated by 22 nucleotides CA264_00420: CA264_00420 - fructose-bisphosphatase class I, at 91,552 to 92,559 _00420 CA264_00425: CA264_00425 - hypothetical protein, at 92,814 to 93,122 _00425 CA264_00430: CA264_00430 - hypothetical protein, at 93,242 to 93,706 _00430 CA264_00435: CA264_00435 - energy transducer TonB, at 93,729 to 94,136 _00435 Position (kb) 92 93 94Strain fitness (log2 ratio) -2 -1 0 1at 91.837 kb on - strand, within CA264_00420at 91.888 kb on + strand, within CA264_00420at 91.888 kb on + strand, within CA264_00420at 92.057 kb on - strand, within CA264_00420at 92.113 kb on + strand, within CA264_00420at 92.178 kb on + strand, within CA264_00420at 92.199 kb on + strand, within CA264_00420at 92.234 kb on - strand, within CA264_00420at 92.243 kb on - strand, within CA264_00420at 92.401 kb on - strand, within CA264_00420at 92.522 kb on + strandat 92.522 kb on + strandat 92.546 kb on + strandat 92.582 kb on + strandat 92.587 kb on + strandat 92.587 kb on + strandat 92.588 kb on - strandat 92.588 kb on - strandat 92.738 kb on + strandat 92.738 kb on + strandat 92.788 kb on + strandat 93.060 kb on + strand, within CA264_00425at 93.102 kb on + strandat 93.102 kb on + strandat 93.103 kb on - strandat 93.177 kb on - strandat 93.183 kb on - strandat 93.196 kb on + strandat 93.197 kb on - strandat 93.197 kb on - strandat 93.243 kb on + strandat 93.327 kb on + strand, within CA264_00430at 93.378 kb on + strand, within CA264_00430at 93.378 kb on + strand, within CA264_00430at 93.379 kb on - strand, within CA264_00430at 93.401 kb on - strand, within CA264_00430at 93.407 kb on + strand, within CA264_00430at 93.408 kb on - strand, within CA264_00430at 93.474 kb on + strand, within CA264_00430at 93.474 kb on + strand, within CA264_00430at 93.537 kb on + strand, within CA264_00430at 93.537 kb on + strand, within CA264_00430at 93.538 kb on - strand, within CA264_00430at 93.538 kb on - strand, within CA264_00430at 93.565 kb on + strand, within CA264_00430at 93.648 kb on - strand, within CA264_00430at 93.706 kb on + strandat 93.706 kb on + strandat 93.706 kb on + strandat 93.706 kb on + strandat 93.706 kb on + strandat 93.707 kb on - strandat 93.707 kb on - strandat 93.710 kb on + strandat 93.710 kb on + strandat 93.715 kb on + strandat 93.716 kb on - strandat 93.716 kb on - strandat 93.723 kb on + strandat 93.724 kb on - strandat 93.726 kb on - strandat 93.730 kb on + strandat 93.732 kb on + strandat 93.737 kb on + strandat 93.762 kb on + strandat 93.857 kb on + strand, within CA264_00435at 93.858 kb on - strand, within CA264_00435at 93.964 kb on + strand, within CA264_00435at 93.964 kb on + strand, within CA264_00435at 93.964 kb on + strand, within CA264_00435at 93.965 kb on - strand, within CA264_00435

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0001 mg/ml
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91,837 - CA264_00420 0.28 -0.8
91,888 + CA264_00420 0.33 -0.9
91,888 + CA264_00420 0.33 -0.1
92,057 - CA264_00420 0.50 -0.2
92,113 + CA264_00420 0.56 -0.8
92,178 + CA264_00420 0.62 -1.1
92,199 + CA264_00420 0.64 -0.0
92,234 - CA264_00420 0.68 -1.6
92,243 - CA264_00420 0.69 -0.3
92,401 - CA264_00420 0.84 -1.8
92,522 + +0.8
92,522 + +0.2
92,546 + -0.2
92,582 + -0.8
92,587 + +0.3
92,587 + -0.1
92,588 - -0.2
92,588 - +1.2
92,738 + +1.3
92,738 + +0.8
92,788 + -0.9
93,060 + CA264_00425 0.80 +1.5
93,102 + -0.8
93,102 + +0.1
93,103 - -1.4
93,177 - +0.2
93,183 - +0.8
93,196 + -0.3
93,197 - -0.1
93,197 - -0.1
93,243 + -0.2
93,327 + CA264_00430 0.18 +0.2
93,378 + CA264_00430 0.29 -0.7
93,378 + CA264_00430 0.29 +0.1
93,379 - CA264_00430 0.29 -0.1
93,401 - CA264_00430 0.34 -0.7
93,407 + CA264_00430 0.35 +0.8
93,408 - CA264_00430 0.36 +0.3
93,474 + CA264_00430 0.50 -1.3
93,474 + CA264_00430 0.50 +0.0
93,537 + CA264_00430 0.63 +0.0
93,537 + CA264_00430 0.63 -1.4
93,538 - CA264_00430 0.64 +0.0
93,538 - CA264_00430 0.64 -0.5
93,565 + CA264_00430 0.69 -0.6
93,648 - CA264_00430 0.87 -0.1
93,706 + +0.2
93,706 + +1.1
93,706 + -0.1
93,706 + -0.2
93,706 + -0.4
93,707 - -0.4
93,707 - -0.1
93,710 + -0.2
93,710 + -0.5
93,715 + +0.3
93,716 - -0.6
93,716 - +0.3
93,723 + +1.0
93,724 - +0.1
93,726 - -0.8
93,730 + -0.1
93,732 + +0.4
93,737 + +0.5
93,762 + -0.4
93,857 + CA264_00435 0.31 +0.3
93,858 - CA264_00435 0.32 +0.0
93,964 + CA264_00435 0.58 -1.1
93,964 + CA264_00435 0.58 +0.3
93,964 + CA264_00435 0.58 +0.7
93,965 - CA264_00435 0.58 -0.0

Or see this region's nucleotide sequence