Strain Fitness in Variovorax sp. OAS795 around ABID97_RS29490

Experiment: Glucuronamide (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS29485 and ABID97_RS29490 are separated by 23 nucleotidesABID97_RS29490 and ABID97_RS29495 are separated by 26 nucleotidesABID97_RS29495 and ABID97_RS29500 are separated by 17 nucleotides ABID97_RS29485: ABID97_RS29485 - tripartite tricarboxylate transporter substrate binding protein, at 820,641 to 821,615 _RS29485 ABID97_RS29490: ABID97_RS29490 - homogentisate 1,2-dioxygenase, at 821,639 to 822,940 _RS29490 ABID97_RS29495: ABID97_RS29495 - NIPSNAP family protein, at 822,967 to 823,290 _RS29495 ABID97_RS29500: ABID97_RS29500 - fumarylacetoacetase, at 823,308 to 824,633 _RS29500 Position (kb) 821 822 823Strain fitness (log2 ratio) -2 -1 0 1at 821.348 kb on - strand, within ABID97_RS29485at 821.348 kb on - strand, within ABID97_RS29485at 822.112 kb on - strand, within ABID97_RS29490at 822.324 kb on + strand, within ABID97_RS29490at 822.532 kb on - strand, within ABID97_RS29490at 822.747 kb on + strand, within ABID97_RS29490at 822.813 kb on + strandat 822.909 kb on + strandat 823.055 kb on + strand, within ABID97_RS29495at 823.056 kb on - strand, within ABID97_RS29495at 823.121 kb on + strand, within ABID97_RS29495at 823.170 kb on - strand, within ABID97_RS29495at 823.173 kb on - strand, within ABID97_RS29495at 823.597 kb on + strand, within ABID97_RS29500

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
remove
821,348 - ABID97_RS29485 0.73 -0.7
821,348 - ABID97_RS29485 0.73 -1.5
822,112 - ABID97_RS29490 0.36 -0.3
822,324 + ABID97_RS29490 0.53 -2.2
822,532 - ABID97_RS29490 0.69 +0.8
822,747 + ABID97_RS29490 0.85 -1.6
822,813 + -1.1
822,909 + +0.0
823,055 + ABID97_RS29495 0.27 -0.9
823,056 - ABID97_RS29495 0.27 +0.1
823,121 + ABID97_RS29495 0.48 -0.5
823,170 - ABID97_RS29495 0.63 +0.2
823,173 - ABID97_RS29495 0.64 -0.0
823,597 + ABID97_RS29500 0.22 -1.1

Or see this region's nucleotide sequence