Strain Fitness in Variovorax sp. OAS795 around ABID97_RS29485

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS29480 and ABID97_RS29485 are separated by 158 nucleotidesABID97_RS29485 and ABID97_RS29490 are separated by 23 nucleotides ABID97_RS29480: ABID97_RS29480 - helix-turn-helix domain-containing protein, at 819,499 to 820,482 _RS29480 ABID97_RS29485: ABID97_RS29485 - tripartite tricarboxylate transporter substrate binding protein, at 820,641 to 821,615 _RS29485 ABID97_RS29490: ABID97_RS29490 - homogentisate 1,2-dioxygenase, at 821,639 to 822,940 _RS29490 Position (kb) 820 821 822Strain fitness (log2 ratio) -2 -1 0 1at 820.013 kb on + strand, within ABID97_RS29480at 820.157 kb on + strand, within ABID97_RS29480at 820.526 kb on + strandat 821.348 kb on - strand, within ABID97_RS29485at 821.348 kb on - strand, within ABID97_RS29485at 822.112 kb on - strand, within ABID97_RS29490at 822.324 kb on + strand, within ABID97_RS29490at 822.532 kb on - strand, within ABID97_RS29490

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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820,013 + ABID97_RS29480 0.52 +0.3
820,157 + ABID97_RS29480 0.67 -0.2
820,526 + +0.7
821,348 - ABID97_RS29485 0.73 -0.7
821,348 - ABID97_RS29485 0.73 -1.5
822,112 - ABID97_RS29490 0.36 -0.3
822,324 + ABID97_RS29490 0.53 -2.2
822,532 - ABID97_RS29490 0.69 +0.8

Or see this region's nucleotide sequence