Strain Fitness in Variovorax sp. OAS795 around ABID97_RS29335

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS29330 and ABID97_RS29335 are separated by 251 nucleotidesABID97_RS29335 and ABID97_RS29340 overlap by 4 nucleotides ABID97_RS29330: ABID97_RS29330 - hypothetical protein, at 790,590 to 791,507 _RS29330 ABID97_RS29335: ABID97_RS29335 - glycosyltransferase family 4 protein, at 791,759 to 792,829 _RS29335 ABID97_RS29340: ABID97_RS29340 - amylo-alpha-1,6-glucosidase, at 792,826 to 794,976 _RS29340 Position (kb) 791 792 793Strain fitness (log2 ratio) -1 0 1at 790.770 kb on + strand, within ABID97_RS29330at 791.208 kb on + strand, within ABID97_RS29330at 791.209 kb on - strand, within ABID97_RS29330at 791.209 kb on - strand, within ABID97_RS29330at 791.239 kb on - strand, within ABID97_RS29330at 791.457 kb on + strandat 791.457 kb on + strandat 791.457 kb on + strandat 791.457 kb on + strandat 791.505 kb on + strandat 792.140 kb on + strand, within ABID97_RS29335at 792.159 kb on - strand, within ABID97_RS29335at 792.279 kb on - strand, within ABID97_RS29335at 792.752 kb on + strandat 792.752 kb on + strandat 792.922 kb on + strandat 792.923 kb on - strandat 793.675 kb on + strand, within ABID97_RS29340

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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790,770 + ABID97_RS29330 0.20 +0.1
791,208 + ABID97_RS29330 0.67 +0.4
791,209 - ABID97_RS29330 0.67 +0.1
791,209 - ABID97_RS29330 0.67 -0.3
791,239 - ABID97_RS29330 0.71 -0.3
791,457 + +0.1
791,457 + -0.4
791,457 + +0.1
791,457 + +0.2
791,505 + -0.4
792,140 + ABID97_RS29335 0.36 -0.5
792,159 - ABID97_RS29335 0.37 -1.3
792,279 - ABID97_RS29335 0.49 -0.2
792,752 + -0.1
792,752 + +0.1
792,922 + -0.4
792,923 - -0.4
793,675 + ABID97_RS29340 0.39 -0.5

Or see this region's nucleotide sequence