Strain Fitness in Variovorax sp. OAS795 around ABID97_RS29050

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS29045 and ABID97_RS29050 overlap by 4 nucleotidesABID97_RS29050 and ABID97_RS29055 overlap by 4 nucleotides ABID97_RS29045: ABID97_RS29045 - tripartite tricarboxylate transporter substrate binding protein, at 727,014 to 728,030 _RS29045 ABID97_RS29050: ABID97_RS29050 - enoyl-CoA hydratase/isomerase family protein, at 728,027 to 728,833 _RS29050 ABID97_RS29055: ABID97_RS29055 - acetate--CoA ligase family protein, at 728,830 to 730,926 _RS29055 Position (kb) 728 729Strain fitness (log2 ratio) -2 -1 0 1at 727.296 kb on + strand, within ABID97_RS29045at 727.297 kb on - strand, within ABID97_RS29045at 727.360 kb on - strand, within ABID97_RS29045at 727.776 kb on + strand, within ABID97_RS29045at 727.804 kb on - strand, within ABID97_RS29045at 727.804 kb on - strand, within ABID97_RS29045at 727.948 kb on - strandat 728.163 kb on - strand, within ABID97_RS29050at 728.163 kb on - strand, within ABID97_RS29050at 728.447 kb on + strand, within ABID97_RS29050at 729.482 kb on - strand, within ABID97_RS29055at 729.641 kb on - strand, within ABID97_RS29055

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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727,296 + ABID97_RS29045 0.28 +0.1
727,297 - ABID97_RS29045 0.28 -0.4
727,360 - ABID97_RS29045 0.34 -0.5
727,776 + ABID97_RS29045 0.75 -1.3
727,804 - ABID97_RS29045 0.78 +0.8
727,804 - ABID97_RS29045 0.78 -0.0
727,948 - -0.9
728,163 - ABID97_RS29050 0.17 +0.3
728,163 - ABID97_RS29050 0.17 -1.8
728,447 + ABID97_RS29050 0.52 -0.5
729,482 - ABID97_RS29055 0.31 +0.3
729,641 - ABID97_RS29055 0.39 +0.7

Or see this region's nucleotide sequence