Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28350

Experiment: Glucuronamide (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS28340 and ABID97_RS28345 overlap by 4 nucleotidesABID97_RS28345 and ABID97_RS28350 are separated by 18 nucleotidesABID97_RS28350 and ABID97_RS28355 are separated by 23 nucleotides ABID97_RS28340: ABID97_RS28340 - Rieske 2Fe-2S domain-containing protein, at 588,431 to 589,741 _RS28340 ABID97_RS28345: ABID97_RS28345 - nuclear transport factor 2 family protein, at 589,738 to 590,253 _RS28345 ABID97_RS28350: ABID97_RS28350 - amidohydrolase family protein, at 590,272 to 591,267 _RS28350 ABID97_RS28355: ABID97_RS28355 - 2,5-dihydroxypyridine 5,6-dioxygenase, at 591,291 to 592,334 _RS28355 Position (kb) 590 591 592Strain fitness (log2 ratio) -2 -1 0 1at 589.895 kb on - strand, within ABID97_RS28345at 589.948 kb on + strand, within ABID97_RS28345at 590.446 kb on + strand, within ABID97_RS28350at 591.650 kb on - strand, within ABID97_RS28355

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
remove
589,895 - ABID97_RS28345 0.30 +0.2
589,948 + ABID97_RS28345 0.41 +0.0
590,446 + ABID97_RS28350 0.17 -2.2
591,650 - ABID97_RS28355 0.34 +0.2

Or see this region's nucleotide sequence