Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27510

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27505 and ABID97_RS27510 are separated by 134 nucleotidesABID97_RS27510 and ABID97_RS27515 are separated by 80 nucleotides ABID97_RS27505: ABID97_RS27505 - IclR family transcriptional regulator, at 417,888 to 418,712 _RS27505 ABID97_RS27510: ABID97_RS27510 - LysR substrate-binding domain-containing protein, at 418,847 to 419,743 _RS27510 ABID97_RS27515: ABID97_RS27515 - aconitase family protein, at 419,824 to 421,818 _RS27515 Position (kb) 418 419 420Strain fitness (log2 ratio) -1 0 1 2at 418.442 kb on + strand, within ABID97_RS27505at 418.447 kb on + strand, within ABID97_RS27505at 418.448 kb on - strand, within ABID97_RS27505at 418.798 kb on + strandat 418.877 kb on + strandat 419.113 kb on - strand, within ABID97_RS27510at 419.216 kb on + strand, within ABID97_RS27510at 419.679 kb on - strandat 419.741 kb on + strandat 420.044 kb on - strand, within ABID97_RS27515at 420.658 kb on + strand, within ABID97_RS27515at 420.659 kb on - strand, within ABID97_RS27515at 420.659 kb on - strand, within ABID97_RS27515

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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418,442 + ABID97_RS27505 0.67 +0.8
418,447 + ABID97_RS27505 0.68 -0.8
418,448 - ABID97_RS27505 0.68 -0.1
418,798 + -0.4
418,877 + +0.5
419,113 - ABID97_RS27510 0.30 +1.2
419,216 + ABID97_RS27510 0.41 +0.4
419,679 - +0.2
419,741 + +0.0
420,044 - ABID97_RS27515 0.11 +0.1
420,658 + ABID97_RS27515 0.42 +0.7
420,659 - ABID97_RS27515 0.42 +1.2
420,659 - ABID97_RS27515 0.42 +2.3

Or see this region's nucleotide sequence