Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27010

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27000 and ABID97_RS27005 are separated by 25 nucleotidesABID97_RS27005 and ABID97_RS27010 overlap by 4 nucleotidesABID97_RS27010 and ABID97_RS27015 overlap by 4 nucleotidesABID97_RS27015 and ABID97_RS27020 are separated by 77 nucleotides ABID97_RS27000: ABID97_RS27000 - DUF2282 domain-containing protein, at 320,302 to 320,589 _RS27000 ABID97_RS27005: ABID97_RS27005 - DUF692 domain-containing protein, at 320,615 to 321,457 _RS27005 ABID97_RS27010: ABID97_RS27010 - DNA-binding domain-containing protein, at 321,454 to 322,242 _RS27010 ABID97_RS27015: ABID97_RS27015 - DoxX family protein, at 322,239 to 322,724 _RS27015 ABID97_RS27020: ABID97_RS27020 - helix-turn-helix transcriptional regulator, at 322,802 to 323,608 _RS27020 Position (kb) 321 322 323Strain fitness (log2 ratio) -1 0 1 2at 320.495 kb on - strand, within ABID97_RS27000at 320.599 kb on + strandat 320.600 kb on - strandat 320.720 kb on + strand, within ABID97_RS27005at 320.721 kb on - strand, within ABID97_RS27005at 320.721 kb on - strand, within ABID97_RS27005at 321.946 kb on + strand, within ABID97_RS27010at 322.395 kb on + strand, within ABID97_RS27015at 322.789 kb on + strandat 322.790 kb on - strandat 322.790 kb on - strandat 322.946 kb on + strand, within ABID97_RS27020at 323.046 kb on - strand, within ABID97_RS27020

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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320,495 - ABID97_RS27000 0.67 +0.2
320,599 + +0.2
320,600 - +0.0
320,720 + ABID97_RS27005 0.12 -0.1
320,721 - ABID97_RS27005 0.13 +0.1
320,721 - ABID97_RS27005 0.13 +1.8
321,946 + ABID97_RS27010 0.62 -0.9
322,395 + ABID97_RS27015 0.32 -0.2
322,789 + -0.2
322,790 - -0.3
322,790 - -0.2
322,946 + ABID97_RS27020 0.18 +0.5
323,046 - ABID97_RS27020 0.30 +0.1

Or see this region's nucleotide sequence