Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26795

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26790 and ABID97_RS26795 are separated by 4 nucleotidesABID97_RS26795 and ABID97_RS26800 are separated by 26 nucleotides ABID97_RS26790: ABID97_RS26790 - transporter substrate-binding domain-containing protein, at 282,777 to 283,928 _RS26790 ABID97_RS26795: ABID97_RS26795 - ANTAR domain-containing protein, at 283,933 to 284,562 _RS26795 ABID97_RS26800: ABID97_RS26800 - bestrophin family ion channel, at 284,589 to 285,566 _RS26800 Position (kb) 283 284 285Strain fitness (log2 ratio) -1 0 1at 282.934 kb on - strand, within ABID97_RS26790at 283.020 kb on + strand, within ABID97_RS26790at 283.084 kb on - strand, within ABID97_RS26790at 283.222 kb on - strand, within ABID97_RS26790at 283.222 kb on - strand, within ABID97_RS26790at 283.227 kb on + strand, within ABID97_RS26790at 283.228 kb on - strand, within ABID97_RS26790at 283.641 kb on + strand, within ABID97_RS26790at 283.641 kb on + strand, within ABID97_RS26790at 283.869 kb on + strandat 283.870 kb on - strandat 284.458 kb on + strand, within ABID97_RS26795at 284.758 kb on + strand, within ABID97_RS26800

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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282,934 - ABID97_RS26790 0.14 -0.4
283,020 + ABID97_RS26790 0.21 -1.0
283,084 - ABID97_RS26790 0.27 -0.5
283,222 - ABID97_RS26790 0.39 -0.5
283,222 - ABID97_RS26790 0.39 +0.0
283,227 + ABID97_RS26790 0.39 +0.1
283,228 - ABID97_RS26790 0.39 -0.2
283,641 + ABID97_RS26790 0.75 +0.1
283,641 + ABID97_RS26790 0.75 -1.1
283,869 + -0.5
283,870 - -0.3
284,458 + ABID97_RS26795 0.83 -1.1
284,758 + ABID97_RS26800 0.17 +0.7

Or see this region's nucleotide sequence