Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26365 and ABID97_RS26370 are separated by 27 nucleotides ABID97_RS26370 and ABID97_RS26375 are separated by 106 nucleotides ABID97_RS26375 and ABID97_RS26380 are separated by 186 nucleotides ABID97_RS26380 and ABID97_RS26385 are separated by 192 nucleotides
ABID97_RS26365: ABID97_RS26365 - helix-turn-helix domain-containing protein, at 195,427 to 195,891
_RS26365
ABID97_RS26370: ABID97_RS26370 - PIN domain-containing protein, at 195,919 to 196,467
_RS26370
ABID97_RS26375: ABID97_RS26375 - LysR substrate-binding domain-containing protein, at 196,574 to 196,999
_RS26375
ABID97_RS26380: ABID97_RS26380 - helix-turn-helix transcriptional regulator, at 197,186 to 197,623
_RS26380
ABID97_RS26385: ABID97_RS26385 - cupin domain-containing protein, at 197,816 to 198,172
_RS26385
Position (kb) 196
197 Strain fitness (log2 ratio) -1
0
1
2
3 at 195.910 kb on + strand at 195.924 kb on - strand at 195.924 kb on - strand at 195.992 kb on - strand, within ABID97_RS26370 at 196.129 kb on + strand, within ABID97_RS26370 at 196.942 kb on + strand, within ABID97_RS26375 at 197.050 kb on + strand at 197.050 kb on + strand at 197.051 kb on - strand at 197.051 kb on - strand at 197.066 kb on - strand at 197.245 kb on + strand, within ABID97_RS26380 at 197.246 kb on - strand, within ABID97_RS26380 at 197.288 kb on - strand, within ABID97_RS26380 at 197.288 kb on - strand, within ABID97_RS26380 at 197.419 kb on - strand, within ABID97_RS26380 at 197.582 kb on + strand at 197.583 kb on - strand at 197.616 kb on - strand at 197.659 kb on - strand at 197.817 kb on + strand at 197.899 kb on + strand, within ABID97_RS26385 at 197.959 kb on + strand, within ABID97_RS26385 at 197.959 kb on + strand, within ABID97_RS26385 at 197.959 kb on + strand, within ABID97_RS26385 at 197.960 kb on - strand, within ABID97_RS26385 at 197.960 kb on - strand, within ABID97_RS26385
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 195,910 + -1.2 195,924 - +0.2 195,924 - +0.2 195,992 - ABID97_RS26370 0.13 -0.1 196,129 + ABID97_RS26370 0.38 +0.1 196,942 + ABID97_RS26375 0.86 -0.9 197,050 + -0.1 197,050 + +0.3 197,051 - -0.7 197,051 - +1.9 197,066 - -1.2 197,245 + ABID97_RS26380 0.13 -1.1 197,246 - ABID97_RS26380 0.14 -0.4 197,288 - ABID97_RS26380 0.23 -0.3 197,288 - ABID97_RS26380 0.23 +0.4 197,419 - ABID97_RS26380 0.53 +0.4 197,582 + -1.3 197,583 - +0.2 197,616 - -0.2 197,659 - +0.1 197,817 + +0.0 197,899 + ABID97_RS26385 0.23 -0.1 197,959 + ABID97_RS26385 0.40 -0.4 197,959 + ABID97_RS26385 0.40 +3.0 197,959 + ABID97_RS26385 0.40 -0.7 197,960 - ABID97_RS26385 0.40 +0.1 197,960 - ABID97_RS26385 0.40 -0.3
Or see this region's nucleotide sequence