Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26375

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26365 and ABID97_RS26370 are separated by 27 nucleotidesABID97_RS26370 and ABID97_RS26375 are separated by 106 nucleotidesABID97_RS26375 and ABID97_RS26380 are separated by 186 nucleotidesABID97_RS26380 and ABID97_RS26385 are separated by 192 nucleotides ABID97_RS26365: ABID97_RS26365 - helix-turn-helix domain-containing protein, at 195,427 to 195,891 _RS26365 ABID97_RS26370: ABID97_RS26370 - PIN domain-containing protein, at 195,919 to 196,467 _RS26370 ABID97_RS26375: ABID97_RS26375 - LysR substrate-binding domain-containing protein, at 196,574 to 196,999 _RS26375 ABID97_RS26380: ABID97_RS26380 - helix-turn-helix transcriptional regulator, at 197,186 to 197,623 _RS26380 ABID97_RS26385: ABID97_RS26385 - cupin domain-containing protein, at 197,816 to 198,172 _RS26385 Position (kb) 196 197Strain fitness (log2 ratio) -1 0 1 2 3at 195.910 kb on + strandat 195.924 kb on - strandat 195.924 kb on - strandat 195.992 kb on - strand, within ABID97_RS26370at 196.129 kb on + strand, within ABID97_RS26370at 196.942 kb on + strand, within ABID97_RS26375at 197.050 kb on + strandat 197.050 kb on + strandat 197.051 kb on - strandat 197.051 kb on - strandat 197.066 kb on - strandat 197.245 kb on + strand, within ABID97_RS26380at 197.246 kb on - strand, within ABID97_RS26380at 197.288 kb on - strand, within ABID97_RS26380at 197.288 kb on - strand, within ABID97_RS26380at 197.419 kb on - strand, within ABID97_RS26380at 197.582 kb on + strandat 197.583 kb on - strandat 197.616 kb on - strandat 197.659 kb on - strandat 197.817 kb on + strandat 197.899 kb on + strand, within ABID97_RS26385at 197.959 kb on + strand, within ABID97_RS26385at 197.959 kb on + strand, within ABID97_RS26385at 197.959 kb on + strand, within ABID97_RS26385at 197.960 kb on - strand, within ABID97_RS26385at 197.960 kb on - strand, within ABID97_RS26385

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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195,910 + -1.2
195,924 - +0.2
195,924 - +0.2
195,992 - ABID97_RS26370 0.13 -0.1
196,129 + ABID97_RS26370 0.38 +0.1
196,942 + ABID97_RS26375 0.86 -0.9
197,050 + -0.1
197,050 + +0.3
197,051 - -0.7
197,051 - +1.9
197,066 - -1.2
197,245 + ABID97_RS26380 0.13 -1.1
197,246 - ABID97_RS26380 0.14 -0.4
197,288 - ABID97_RS26380 0.23 -0.3
197,288 - ABID97_RS26380 0.23 +0.4
197,419 - ABID97_RS26380 0.53 +0.4
197,582 + -1.3
197,583 - +0.2
197,616 - -0.2
197,659 - +0.1
197,817 + +0.0
197,899 + ABID97_RS26385 0.23 -0.1
197,959 + ABID97_RS26385 0.40 -0.4
197,959 + ABID97_RS26385 0.40 +3.0
197,959 + ABID97_RS26385 0.40 -0.7
197,960 - ABID97_RS26385 0.40 +0.1
197,960 - ABID97_RS26385 0.40 -0.3

Or see this region's nucleotide sequence