Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26345

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26335 and ABID97_RS26340 are separated by 59 nucleotidesABID97_RS26340 and ABID97_RS26345 are separated by 53 nucleotidesABID97_RS26345 and ABID97_RS26350 are separated by 17 nucleotides ABID97_RS26335: ABID97_RS26335 - VOC family protein, at 190,402 to 190,803 _RS26335 ABID97_RS26340: ABID97_RS26340 - ABC transporter permease, at 190,863 to 191,633 _RS26340 ABID97_RS26345: ABID97_RS26345 - VOC family protein, at 191,687 to 192,265 _RS26345 ABID97_RS26350: ABID97_RS26350 - ABC transporter substrate-binding protein, at 192,283 to 193,299 _RS26350 Position (kb) 191 192 193Strain fitness (log2 ratio) -2 -1 0 1at 190.913 kb on - strandat 191.110 kb on + strand, within ABID97_RS26340at 191.110 kb on - strand, within ABID97_RS26340at 191.475 kb on + strand, within ABID97_RS26340at 191.476 kb on - strand, within ABID97_RS26340at 191.880 kb on + strand, within ABID97_RS26345at 191.881 kb on - strand, within ABID97_RS26345at 191.881 kb on - strand, within ABID97_RS26345at 191.881 kb on - strand, within ABID97_RS26345at 192.153 kb on + strand, within ABID97_RS26345at 192.154 kb on - strand, within ABID97_RS26345at 193.187 kb on + strand, within ABID97_RS26350at 193.188 kb on - strand, within ABID97_RS26350at 193.188 kb on - strand, within ABID97_RS26350

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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190,913 - +0.4
191,110 + ABID97_RS26340 0.32 +1.3
191,110 - ABID97_RS26340 0.32 +0.1
191,475 + ABID97_RS26340 0.79 +0.3
191,476 - ABID97_RS26340 0.80 +0.3
191,880 + ABID97_RS26345 0.33 +1.2
191,881 - ABID97_RS26345 0.34 -0.1
191,881 - ABID97_RS26345 0.34 -0.6
191,881 - ABID97_RS26345 0.34 +0.3
192,153 + ABID97_RS26345 0.80 +0.3
192,154 - ABID97_RS26345 0.81 +0.7
193,187 + ABID97_RS26350 0.89 -0.3
193,188 - ABID97_RS26350 0.89 -0.4
193,188 - ABID97_RS26350 0.89 -2.1

Or see this region's nucleotide sequence