Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26000 and ABID97_RS26005 are separated by 24 nucleotides ABID97_RS26005 and ABID97_RS26010 are separated by 45 nucleotides ABID97_RS26010 and ABID97_RS26015 are separated by 131 nucleotides
ABID97_RS26000: ABID97_RS26000 - quinone oxidoreductase, at 124,245 to 125,228
_RS26000
ABID97_RS26005: ABID97_RS26005 - SDR family NAD(P)-dependent oxidoreductase, at 125,253 to 126,002
_RS26005
ABID97_RS26010: ABID97_RS26010 - ABC transporter substrate-binding protein, at 126,048 to 127,208
_RS26010
ABID97_RS26015: ABID97_RS26015 - branched-chain amino acid ABC transporter permease, at 127,340 to 128,210
_RS26015
Position (kb) 126
127
128 Strain fitness (log2 ratio) -1
0
1 at 125.257 kb on + strand at 125.276 kb on - strand at 126.396 kb on + strand, within ABID97_RS26010 at 126.397 kb on - strand, within ABID97_RS26010 at 126.924 kb on + strand, within ABID97_RS26010 at 127.392 kb on - strand at 127.392 kb on - strand at 127.506 kb on - strand, within ABID97_RS26015 at 127.824 kb on - strand, within ABID97_RS26015 at 128.018 kb on - strand, within ABID97_RS26015 at 128.118 kb on + strand, within ABID97_RS26015 at 128.119 kb on - strand, within ABID97_RS26015
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 125,257 + +0.6 125,276 - -0.0 126,396 + ABID97_RS26010 0.30 -1.1 126,397 - ABID97_RS26010 0.30 +0.2 126,924 + ABID97_RS26010 0.75 -0.1 127,392 - +1.2 127,392 - -0.2 127,506 - ABID97_RS26015 0.19 -0.1 127,824 - ABID97_RS26015 0.56 -0.0 128,018 - ABID97_RS26015 0.78 -0.4 128,118 + ABID97_RS26015 0.89 -0.2 128,119 - ABID97_RS26015 0.89 -0.5
Or see this region's nucleotide sequence