Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25775 and ABID97_RS25780 are separated by 22 nucleotides ABID97_RS25780 and ABID97_RS25785 are separated by 10 nucleotides
ABID97_RS25775: ABID97_RS25775 - NAD-dependent epimerase/dehydratase family protein, at 75,322 to 76,308
_RS25775
ABID97_RS25780: ABID97_RS25780 - NAD-dependent succinate-semialdehyde dehydrogenase, at 76,331 to 77,800
_RS25780
ABID97_RS25785: ABID97_RS25785 - LysR substrate-binding domain-containing protein, at 77,811 to 78,722
_RS25785
Position (kb) 76
77
78 Strain fitness (log2 ratio) -1
0
1 at 75.538 kb on + strand, within ABID97_RS25775 at 75.748 kb on + strand, within ABID97_RS25775 at 75.748 kb on + strand, within ABID97_RS25775 at 75.880 kb on + strand, within ABID97_RS25775 at 75.922 kb on + strand, within ABID97_RS25775 at 75.922 kb on + strand, within ABID97_RS25775 at 75.923 kb on - strand, within ABID97_RS25775 at 76.040 kb on - strand, within ABID97_RS25775 at 76.040 kb on - strand, within ABID97_RS25775 at 76.089 kb on - strand, within ABID97_RS25775 at 76.121 kb on - strand, within ABID97_RS25775 at 76.121 kb on - strand, within ABID97_RS25775 at 76.679 kb on + strand, within ABID97_RS25780 at 77.447 kb on + strand, within ABID97_RS25780 at 77.447 kb on + strand, within ABID97_RS25780 at 77.447 kb on + strand, within ABID97_RS25780 at 77.448 kb on - strand, within ABID97_RS25780 at 77.450 kb on + strand, within ABID97_RS25780 at 77.777 kb on + strand at 77.777 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 75,538 + ABID97_RS25775 0.22 +1.0 75,748 + ABID97_RS25775 0.43 -0.2 75,748 + ABID97_RS25775 0.43 -0.9 75,880 + ABID97_RS25775 0.57 -0.9 75,922 + ABID97_RS25775 0.61 +0.4 75,922 + ABID97_RS25775 0.61 -0.3 75,923 - ABID97_RS25775 0.61 +0.1 76,040 - ABID97_RS25775 0.73 -1.0 76,040 - ABID97_RS25775 0.73 +0.0 76,089 - ABID97_RS25775 0.78 +0.0 76,121 - ABID97_RS25775 0.81 +0.9 76,121 - ABID97_RS25775 0.81 +0.1 76,679 + ABID97_RS25780 0.24 +0.4 77,447 + ABID97_RS25780 0.76 -0.2 77,447 + ABID97_RS25780 0.76 +0.1 77,447 + ABID97_RS25780 0.76 +1.3 77,448 - ABID97_RS25780 0.76 -0.2 77,450 + ABID97_RS25780 0.76 +1.0 77,777 + +0.7 77,777 + +0.8
Or see this region's nucleotide sequence