Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25550 and ABID97_RS25555 are separated by 26 nucleotides ABID97_RS25555 and ABID97_RS25560 are separated by 38 nucleotides ABID97_RS25560 and ABID97_RS25565 are separated by 43 nucleotides ABID97_RS25565 and ABID97_RS25570 overlap by 12 nucleotides
ABID97_RS25550: ABID97_RS25550 - alpha/beta fold hydrolase, at 29,974 to 31,188
_RS25550
ABID97_RS25555: ABID97_RS25555 - alpha/beta hydrolase, at 31,215 to 32,036
_RS25555
ABID97_RS25560: ABID97_RS25560 - alpha/beta hydrolase, at 32,075 to 33,010
_RS25560
ABID97_RS25565: ABID97_RS25565 - NADP-dependent oxidoreductase, at 33,054 to 33,998
_RS25565
ABID97_RS25570: ABID97_RS25570 - alkene reductase, at 33,987 to 35,048
_RS25570
Position (kb) 32
33
34 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 32.140 kb on + strand at 32.140 kb on + strand at 32.141 kb on - strand at 32.193 kb on - strand, within ABID97_RS25560 at 32.474 kb on + strand, within ABID97_RS25560 at 33.055 kb on + strand at 33.347 kb on - strand, within ABID97_RS25565 at 33.437 kb on - strand, within ABID97_RS25565 at 33.688 kb on + strand, within ABID97_RS25565 at 33.689 kb on - strand, within ABID97_RS25565
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 32,140 + +1.1 32,140 + +0.1 32,141 - +4.1 32,193 - ABID97_RS25560 0.13 -1.1 32,474 + ABID97_RS25560 0.43 -0.3 33,055 + +0.2 33,347 - ABID97_RS25565 0.31 -0.3 33,437 - ABID97_RS25565 0.41 +0.1 33,688 + ABID97_RS25565 0.67 +0.4 33,689 - ABID97_RS25565 0.67 +0.3
Or see this region's nucleotide sequence