Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS23925 and ABID97_RS23930 overlap by 17 nucleotides ABID97_RS23930 and ABID97_RS23935 are separated by 36 nucleotides ABID97_RS23935 and ABID97_RS23940 are separated by 74 nucleotides
ABID97_RS23925: ABID97_RS23925 - hypothetical protein, at 4,951,248 to 4,951,932
_RS23925
ABID97_RS23930: ABID97_RS23930 - SURF1 family protein, at 4,951,916 to 4,952,725
_RS23930
ABID97_RS23935: ABID97_RS23935 - twin transmembrane helix small protein, at 4,952,762 to 4,952,983
_RS23935
ABID97_RS23940: ABID97_RS23940 - cytochrome c oxidase subunit 3, at 4,953,058 to 4,953,939
_RS23940
Position (kb) 4952
4953 Strain fitness (log2 ratio) -1
0
1
2
3 at 4951.763 kb on + strand, within ABID97_RS23925 at 4951.763 kb on + strand, within ABID97_RS23925 at 4951.763 kb on + strand, within ABID97_RS23925 at 4951.764 kb on - strand, within ABID97_RS23925 at 4951.764 kb on - strand, within ABID97_RS23925 at 4951.764 kb on - strand, within ABID97_RS23925 at 4951.764 kb on - strand, within ABID97_RS23925 at 4951.766 kb on + strand, within ABID97_RS23925 at 4951.776 kb on - strand, within ABID97_RS23925 at 4951.986 kb on + strand at 4951.986 kb on + strand at 4951.986 kb on + strand at 4951.986 kb on + strand at 4951.987 kb on - strand at 4951.994 kb on + strand at 4951.994 kb on + strand at 4951.995 kb on - strand at 4952.036 kb on + strand, within ABID97_RS23930 at 4952.037 kb on + strand, within ABID97_RS23930 at 4952.038 kb on - strand, within ABID97_RS23930 at 4952.406 kb on + strand, within ABID97_RS23930 at 4952.407 kb on - strand, within ABID97_RS23930 at 4952.407 kb on - strand, within ABID97_RS23930 at 4952.407 kb on - strand, within ABID97_RS23930 at 4952.445 kb on + strand, within ABID97_RS23930 at 4952.445 kb on + strand, within ABID97_RS23930 at 4952.445 kb on + strand, within ABID97_RS23930 at 4952.446 kb on - strand, within ABID97_RS23930 at 4952.446 kb on - strand, within ABID97_RS23930 at 4952.446 kb on - strand, within ABID97_RS23930 at 4952.769 kb on - strand at 4952.826 kb on - strand, within ABID97_RS23935 at 4952.826 kb on - strand, within ABID97_RS23935 at 4952.826 kb on - strand, within ABID97_RS23935 at 4952.981 kb on + strand at 4952.981 kb on + strand at 4952.981 kb on + strand at 4952.981 kb on + strand at 4952.981 kb on + strand at 4952.982 kb on - strand at 4952.982 kb on - strand at 4952.982 kb on - strand at 4953.080 kb on + strand at 4953.080 kb on + strand at 4953.080 kb on + strand at 4953.080 kb on + strand at 4953.080 kb on + strand at 4953.080 kb on + strand at 4953.081 kb on + strand at 4953.081 kb on - strand at 4953.081 kb on - strand at 4953.081 kb on - strand at 4953.081 kb on - strand at 4953.117 kb on - strand at 4953.294 kb on + strand, within ABID97_RS23940 at 4953.296 kb on + strand, within ABID97_RS23940 at 4953.296 kb on + strand, within ABID97_RS23940 at 4953.297 kb on - strand, within ABID97_RS23940 at 4953.308 kb on + strand, within ABID97_RS23940 at 4953.714 kb on - strand, within ABID97_RS23940 at 4953.714 kb on - strand, within ABID97_RS23940 at 4953.714 kb on - strand, within ABID97_RS23940 at 4953.905 kb on + strand at 4953.905 kb on + strand at 4953.905 kb on + strand at 4953.906 kb on - strand at 4953.906 kb on - strand at 4953.906 kb on - strand at 4953.908 kb on + strand at 4953.908 kb on + strand at 4953.909 kb on - strand at 4953.939 kb on + strand at 4953.939 kb on + strand at 4953.940 kb on - strand at 4953.940 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 4,951,763 + ABID97_RS23925 0.75 +0.9 4,951,763 + ABID97_RS23925 0.75 -0.1 4,951,763 + ABID97_RS23925 0.75 +0.1 4,951,764 - ABID97_RS23925 0.75 +0.3 4,951,764 - ABID97_RS23925 0.75 -0.2 4,951,764 - ABID97_RS23925 0.75 -0.4 4,951,764 - ABID97_RS23925 0.75 +0.2 4,951,766 + ABID97_RS23925 0.76 +0.1 4,951,776 - ABID97_RS23925 0.77 -0.4 4,951,986 + -0.2 4,951,986 + +0.4 4,951,986 + +0.6 4,951,986 + +0.3 4,951,987 - -0.2 4,951,994 + -0.6 4,951,994 + +1.2 4,951,995 - +0.6 4,952,036 + ABID97_RS23930 0.15 +0.2 4,952,037 + ABID97_RS23930 0.15 +0.1 4,952,038 - ABID97_RS23930 0.15 +0.1 4,952,406 + ABID97_RS23930 0.60 +0.6 4,952,407 - ABID97_RS23930 0.61 -1.2 4,952,407 - ABID97_RS23930 0.61 +1.0 4,952,407 - ABID97_RS23930 0.61 -0.0 4,952,445 + ABID97_RS23930 0.65 +0.3 4,952,445 + ABID97_RS23930 0.65 -0.3 4,952,445 + ABID97_RS23930 0.65 -0.4 4,952,446 - ABID97_RS23930 0.65 -0.1 4,952,446 - ABID97_RS23930 0.65 +0.7 4,952,446 - ABID97_RS23930 0.65 -0.2 4,952,769 - -0.4 4,952,826 - ABID97_RS23935 0.29 +0.7 4,952,826 - ABID97_RS23935 0.29 -0.2 4,952,826 - ABID97_RS23935 0.29 +0.3 4,952,981 + -0.8 4,952,981 + +0.9 4,952,981 + +0.1 4,952,981 + +0.2 4,952,981 + -0.1 4,952,982 - +3.0 4,952,982 - -0.2 4,952,982 - -0.2 4,953,080 + +0.9 4,953,080 + -0.4 4,953,080 + -0.2 4,953,080 + -0.7 4,953,080 + -0.2 4,953,080 + -0.3 4,953,081 + -0.9 4,953,081 - -1.5 4,953,081 - +0.4 4,953,081 - -0.6 4,953,081 - -1.0 4,953,117 - +0.1 4,953,294 + ABID97_RS23940 0.27 -0.5 4,953,296 + ABID97_RS23940 0.27 -0.1 4,953,296 + ABID97_RS23940 0.27 -0.1 4,953,297 - ABID97_RS23940 0.27 -0.4 4,953,308 + ABID97_RS23940 0.28 -0.6 4,953,714 - ABID97_RS23940 0.74 -1.4 4,953,714 - ABID97_RS23940 0.74 -1.0 4,953,714 - ABID97_RS23940 0.74 +0.7 4,953,905 + -0.2 4,953,905 + -1.1 4,953,905 + -0.3 4,953,906 - -1.4 4,953,906 - -1.3 4,953,906 - -0.9 4,953,908 + -0.4 4,953,908 + -1.5 4,953,909 - -1.3 4,953,939 + +0.2 4,953,939 + +1.3 4,953,940 - -0.4 4,953,940 - -0.7
Or see this region's nucleotide sequence