Strain Fitness in Variovorax sp. OAS795 around ABID97_RS23815

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS23810 and ABID97_RS23815 are separated by 107 nucleotidesABID97_RS23815 and ABID97_RS23820 are separated by 32 nucleotides ABID97_RS23810: ABID97_RS23810 - LysR substrate-binding domain-containing protein, at 4,929,350 to 4,930,219 _RS23810 ABID97_RS23815: ABID97_RS23815 - 4-oxalocrotonate tautomerase family protein, at 4,930,327 to 4,930,725 _RS23815 ABID97_RS23820: ABID97_RS23820 - tetratricopeptide repeat protein, at 4,930,758 to 4,932,116 _RS23820 Position (kb) 4930 4931Strain fitness (log2 ratio) -3 -2 -1 0 1at 4929.351 kb on + strandat 4929.351 kb on + strandat 4929.351 kb on + strandat 4929.582 kb on + strand, within ABID97_RS23810at 4929.772 kb on + strand, within ABID97_RS23810at 4929.810 kb on + strand, within ABID97_RS23810at 4929.811 kb on - strand, within ABID97_RS23810at 4929.919 kb on - strand, within ABID97_RS23810at 4930.011 kb on + strand, within ABID97_RS23810at 4930.313 kb on + strandat 4930.335 kb on + strandat 4930.459 kb on + strand, within ABID97_RS23815at 4930.460 kb on - strand, within ABID97_RS23815at 4930.460 kb on - strand, within ABID97_RS23815at 4930.639 kb on + strand, within ABID97_RS23815at 4930.639 kb on + strand, within ABID97_RS23815at 4930.640 kb on - strand, within ABID97_RS23815at 4930.640 kb on - strand, within ABID97_RS23815at 4930.929 kb on + strand, within ABID97_RS23820at 4931.043 kb on + strand, within ABID97_RS23820at 4931.043 kb on + strand, within ABID97_RS23820at 4931.044 kb on - strand, within ABID97_RS23820at 4931.158 kb on - strand, within ABID97_RS23820at 4931.238 kb on + strand, within ABID97_RS23820at 4931.238 kb on + strand, within ABID97_RS23820at 4931.239 kb on - strand, within ABID97_RS23820at 4931.239 kb on - strand, within ABID97_RS23820at 4931.557 kb on - strand, within ABID97_RS23820at 4931.557 kb on - strand, within ABID97_RS23820at 4931.624 kb on + strand, within ABID97_RS23820at 4931.701 kb on - strand, within ABID97_RS23820at 4931.701 kb on - strand, within ABID97_RS23820at 4931.701 kb on - strand, within ABID97_RS23820at 4931.701 kb on - strand, within ABID97_RS23820at 4931.706 kb on + strand, within ABID97_RS23820at 4931.707 kb on - strand, within ABID97_RS23820at 4931.707 kb on - strand, within ABID97_RS23820at 4931.707 kb on - strand, within ABID97_RS23820at 4931.707 kb on - strand, within ABID97_RS23820

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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4,929,351 + +0.2
4,929,351 + +0.4
4,929,351 + -0.4
4,929,582 + ABID97_RS23810 0.27 +0.1
4,929,772 + ABID97_RS23810 0.49 -0.1
4,929,810 + ABID97_RS23810 0.53 +1.2
4,929,811 - ABID97_RS23810 0.53 -0.3
4,929,919 - ABID97_RS23810 0.65 -0.6
4,930,011 + ABID97_RS23810 0.76 -0.4
4,930,313 + +0.1
4,930,335 + -0.3
4,930,459 + ABID97_RS23815 0.33 -0.5
4,930,460 - ABID97_RS23815 0.33 -1.2
4,930,460 - ABID97_RS23815 0.33 -0.1
4,930,639 + ABID97_RS23815 0.78 -0.7
4,930,639 + ABID97_RS23815 0.78 -1.1
4,930,640 - ABID97_RS23815 0.78 +0.7
4,930,640 - ABID97_RS23815 0.78 -1.6
4,930,929 + ABID97_RS23820 0.13 -0.8
4,931,043 + ABID97_RS23820 0.21 +0.4
4,931,043 + ABID97_RS23820 0.21 -0.9
4,931,044 - ABID97_RS23820 0.21 -3.2
4,931,158 - ABID97_RS23820 0.29 +0.6
4,931,238 + ABID97_RS23820 0.35 -2.3
4,931,238 + ABID97_RS23820 0.35 -0.1
4,931,239 - ABID97_RS23820 0.35 -0.6
4,931,239 - ABID97_RS23820 0.35 -0.7
4,931,557 - ABID97_RS23820 0.59 -1.0
4,931,557 - ABID97_RS23820 0.59 +0.7
4,931,624 + ABID97_RS23820 0.64 +0.0
4,931,701 - ABID97_RS23820 0.69 -0.6
4,931,701 - ABID97_RS23820 0.69 +0.1
4,931,701 - ABID97_RS23820 0.69 +0.1
4,931,701 - ABID97_RS23820 0.69 -1.1
4,931,706 + ABID97_RS23820 0.70 -0.6
4,931,707 - ABID97_RS23820 0.70 -1.4
4,931,707 - ABID97_RS23820 0.70 -1.3
4,931,707 - ABID97_RS23820 0.70 -0.7
4,931,707 - ABID97_RS23820 0.70 -1.3

Or see this region's nucleotide sequence