Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS23810 and ABID97_RS23815 are separated by 107 nucleotides ABID97_RS23815 and ABID97_RS23820 are separated by 32 nucleotides
ABID97_RS23810: ABID97_RS23810 - LysR substrate-binding domain-containing protein, at 4,929,350 to 4,930,219
_RS23810
ABID97_RS23815: ABID97_RS23815 - 4-oxalocrotonate tautomerase family protein, at 4,930,327 to 4,930,725
_RS23815
ABID97_RS23820: ABID97_RS23820 - tetratricopeptide repeat protein, at 4,930,758 to 4,932,116
_RS23820
Position (kb)
4930
4931 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4929.351 kb on + strand at 4929.351 kb on + strand at 4929.351 kb on + strand at 4929.582 kb on + strand, within ABID97_RS23810 at 4929.772 kb on + strand, within ABID97_RS23810 at 4929.810 kb on + strand, within ABID97_RS23810 at 4929.811 kb on - strand, within ABID97_RS23810 at 4929.919 kb on - strand, within ABID97_RS23810 at 4930.011 kb on + strand, within ABID97_RS23810 at 4930.313 kb on + strand at 4930.335 kb on + strand at 4930.459 kb on + strand, within ABID97_RS23815 at 4930.460 kb on - strand, within ABID97_RS23815 at 4930.460 kb on - strand, within ABID97_RS23815 at 4930.639 kb on + strand, within ABID97_RS23815 at 4930.639 kb on + strand, within ABID97_RS23815 at 4930.640 kb on - strand, within ABID97_RS23815 at 4930.640 kb on - strand, within ABID97_RS23815 at 4930.929 kb on + strand, within ABID97_RS23820 at 4931.043 kb on + strand, within ABID97_RS23820 at 4931.043 kb on + strand, within ABID97_RS23820 at 4931.044 kb on - strand, within ABID97_RS23820 at 4931.158 kb on - strand, within ABID97_RS23820 at 4931.238 kb on + strand, within ABID97_RS23820 at 4931.238 kb on + strand, within ABID97_RS23820 at 4931.239 kb on - strand, within ABID97_RS23820 at 4931.239 kb on - strand, within ABID97_RS23820 at 4931.557 kb on - strand, within ABID97_RS23820 at 4931.557 kb on - strand, within ABID97_RS23820 at 4931.624 kb on + strand, within ABID97_RS23820 at 4931.701 kb on - strand, within ABID97_RS23820 at 4931.701 kb on - strand, within ABID97_RS23820 at 4931.701 kb on - strand, within ABID97_RS23820 at 4931.701 kb on - strand, within ABID97_RS23820 at 4931.706 kb on + strand, within ABID97_RS23820 at 4931.707 kb on - strand, within ABID97_RS23820 at 4931.707 kb on - strand, within ABID97_RS23820 at 4931.707 kb on - strand, within ABID97_RS23820 at 4931.707 kb on - strand, within ABID97_RS23820
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 4,929,351 + +0.2 4,929,351 + +0.4 4,929,351 + -0.4 4,929,582 + ABID97_RS23810 0.27 +0.1 4,929,772 + ABID97_RS23810 0.49 -0.1 4,929,810 + ABID97_RS23810 0.53 +1.2 4,929,811 - ABID97_RS23810 0.53 -0.3 4,929,919 - ABID97_RS23810 0.65 -0.6 4,930,011 + ABID97_RS23810 0.76 -0.4 4,930,313 + +0.1 4,930,335 + -0.3 4,930,459 + ABID97_RS23815 0.33 -0.5 4,930,460 - ABID97_RS23815 0.33 -1.2 4,930,460 - ABID97_RS23815 0.33 -0.1 4,930,639 + ABID97_RS23815 0.78 -0.7 4,930,639 + ABID97_RS23815 0.78 -1.1 4,930,640 - ABID97_RS23815 0.78 +0.7 4,930,640 - ABID97_RS23815 0.78 -1.6 4,930,929 + ABID97_RS23820 0.13 -0.8 4,931,043 + ABID97_RS23820 0.21 +0.4 4,931,043 + ABID97_RS23820 0.21 -0.9 4,931,044 - ABID97_RS23820 0.21 -3.2 4,931,158 - ABID97_RS23820 0.29 +0.6 4,931,238 + ABID97_RS23820 0.35 -2.3 4,931,238 + ABID97_RS23820 0.35 -0.1 4,931,239 - ABID97_RS23820 0.35 -0.6 4,931,239 - ABID97_RS23820 0.35 -0.7 4,931,557 - ABID97_RS23820 0.59 -1.0 4,931,557 - ABID97_RS23820 0.59 +0.7 4,931,624 + ABID97_RS23820 0.64 +0.0 4,931,701 - ABID97_RS23820 0.69 -0.6 4,931,701 - ABID97_RS23820 0.69 +0.1 4,931,701 - ABID97_RS23820 0.69 +0.1 4,931,701 - ABID97_RS23820 0.69 -1.1 4,931,706 + ABID97_RS23820 0.70 -0.6 4,931,707 - ABID97_RS23820 0.70 -1.4 4,931,707 - ABID97_RS23820 0.70 -1.3 4,931,707 - ABID97_RS23820 0.70 -0.7 4,931,707 - ABID97_RS23820 0.70 -1.3
Or see this region's nucleotide sequence