Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22785

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS22780 and ABID97_RS22785 are separated by 47 nucleotidesABID97_RS22785 and ABID97_RS22790 overlap by 4 nucleotidesABID97_RS22790 and ABID97_RS22795 are separated by 10 nucleotides ABID97_RS22780: ABID97_RS22780 - phenylacetate--CoA ligase PaaK, at 4,716,780 to 4,718,096 _RS22780 ABID97_RS22785: ABID97_RS22785 - 1,2-phenylacetyl-CoA epoxidase subunit PaaA, at 4,718,144 to 4,719,157 _RS22785 ABID97_RS22790: ABID97_RS22790 - 1,2-phenylacetyl-CoA epoxidase subunit PaaB, at 4,719,154 to 4,719,450 _RS22790 ABID97_RS22795: ABID97_RS22795 - 1,2-phenylacetyl-CoA epoxidase subunit PaaC, at 4,719,461 to 4,720,240 _RS22795 Position (kb) 4718 4719 4720Strain fitness (log2 ratio) -1 0 1at 4717.351 kb on - strand, within ABID97_RS22780at 4717.351 kb on - strand, within ABID97_RS22780at 4717.501 kb on - strand, within ABID97_RS22780at 4717.501 kb on - strand, within ABID97_RS22780at 4717.860 kb on + strand, within ABID97_RS22780at 4718.147 kb on + strandat 4718.147 kb on + strandat 4718.147 kb on + strandat 4718.147 kb on + strandat 4718.535 kb on - strand, within ABID97_RS22785at 4718.711 kb on + strand, within ABID97_RS22785at 4719.401 kb on - strand, within ABID97_RS22790

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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4,717,351 - ABID97_RS22780 0.43 +0.6
4,717,351 - ABID97_RS22780 0.43 +1.5
4,717,501 - ABID97_RS22780 0.55 -0.3
4,717,501 - ABID97_RS22780 0.55 -0.6
4,717,860 + ABID97_RS22780 0.82 -0.1
4,718,147 + -0.6
4,718,147 + -0.3
4,718,147 + +0.1
4,718,147 + +1.5
4,718,535 - ABID97_RS22785 0.39 -0.8
4,718,711 + ABID97_RS22785 0.56 -0.5
4,719,401 - ABID97_RS22790 0.83 -0.2

Or see this region's nucleotide sequence