Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22135

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS22130 and ABID97_RS22135 are separated by 53 nucleotidesABID97_RS22135 and ABID97_RS22140 are separated by 80 nucleotides ABID97_RS22130: ABID97_RS22130 - divalent metal cation transporter, at 4,582,759 to 4,584,012 _RS22130 ABID97_RS22135: ABID97_RS22135 - LysR family transcriptional regulator, at 4,584,066 to 4,584,980 _RS22135 ABID97_RS22140: ABID97_RS22140 - indolepyruvate ferredoxin oxidoreductase subunit alpha, at 4,585,061 to 4,587,220 _RS22140 Position (kb) 4584 4585Strain fitness (log2 ratio) -1 0 1at 4583.088 kb on - strand, within ABID97_RS22130at 4583.550 kb on - strand, within ABID97_RS22130at 4583.652 kb on - strand, within ABID97_RS22130at 4583.921 kb on + strandat 4583.922 kb on - strandat 4584.377 kb on - strand, within ABID97_RS22135at 4585.176 kb on - strandat 4585.242 kb on - strandat 4585.242 kb on - strandat 4585.323 kb on - strand, within ABID97_RS22140at 4585.488 kb on - strand, within ABID97_RS22140at 4585.488 kb on - strand, within ABID97_RS22140at 4585.712 kb on + strand, within ABID97_RS22140at 4585.712 kb on + strand, within ABID97_RS22140at 4585.794 kb on - strand, within ABID97_RS22140at 4585.794 kb on - strand, within ABID97_RS22140at 4585.874 kb on + strand, within ABID97_RS22140at 4585.874 kb on + strand, within ABID97_RS22140

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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4,583,088 - ABID97_RS22130 0.26 -0.5
4,583,550 - ABID97_RS22130 0.63 -0.8
4,583,652 - ABID97_RS22130 0.71 -0.9
4,583,921 + -0.7
4,583,922 - -1.0
4,584,377 - ABID97_RS22135 0.34 -1.4
4,585,176 - +0.7
4,585,242 - -0.4
4,585,242 - -0.2
4,585,323 - ABID97_RS22140 0.12 -0.2
4,585,488 - ABID97_RS22140 0.20 -0.0
4,585,488 - ABID97_RS22140 0.20 -0.2
4,585,712 + ABID97_RS22140 0.30 -1.1
4,585,712 + ABID97_RS22140 0.30 -0.8
4,585,794 - ABID97_RS22140 0.34 -0.3
4,585,794 - ABID97_RS22140 0.34 -0.7
4,585,874 + ABID97_RS22140 0.38 +0.0
4,585,874 + ABID97_RS22140 0.38 -0.4

Or see this region's nucleotide sequence