Strain Fitness in Variovorax sp. OAS795 around ABID97_RS21950

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS21945 and ABID97_RS21950 are separated by 23 nucleotidesABID97_RS21950 and ABID97_RS21955 are separated by 6 nucleotidesABID97_RS21955 and ABID97_RS21960 are separated by 115 nucleotides ABID97_RS21945: ABID97_RS21945 - hemolysin family protein, at 4,539,567 to 4,540,877 _RS21945 ABID97_RS21950: ABID97_RS21950 - symmetrical bis(5'-nucleosyl)-tetraphosphatase, at 4,540,901 to 4,541,752 _RS21950 ABID97_RS21955: ABID97_RS21955 - GNAT family protein, at 4,541,759 to 4,542,475 _RS21955 ABID97_RS21960: ABID97_RS21960 - PLP-dependent aminotransferase family protein, at 4,542,591 to 4,544,072 _RS21960 Position (kb) 4540 4541 4542Strain fitness (log2 ratio) -2 -1 0 1 2at 4540.721 kb on + strand, within ABID97_RS21945at 4540.721 kb on + strand, within ABID97_RS21945at 4540.722 kb on - strand, within ABID97_RS21945at 4540.722 kb on - strand, within ABID97_RS21945at 4540.910 kb on + strandat 4540.910 kb on + strandat 4540.910 kb on + strandat 4541.064 kb on - strand, within ABID97_RS21950at 4541.372 kb on + strand, within ABID97_RS21950at 4541.372 kb on + strand, within ABID97_RS21950at 4541.372 kb on + strand, within ABID97_RS21950at 4541.373 kb on - strand, within ABID97_RS21950at 4541.916 kb on + strand, within ABID97_RS21955at 4541.916 kb on + strand, within ABID97_RS21955at 4542.058 kb on - strand, within ABID97_RS21955at 4542.284 kb on + strand, within ABID97_RS21955at 4542.285 kb on + strandat 4542.286 kb on - strand, within ABID97_RS21955at 4542.286 kb on - strand, within ABID97_RS21955at 4542.286 kb on - strand, within ABID97_RS21955at 4542.286 kb on - strand, within ABID97_RS21955at 4542.318 kb on + strand, within ABID97_RS21955at 4542.318 kb on + strand, within ABID97_RS21955at 4542.376 kb on - strand, within ABID97_RS21955at 4542.454 kb on - strandat 4542.520 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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4,540,721 + ABID97_RS21945 0.88 -0.9
4,540,721 + ABID97_RS21945 0.88 -1.6
4,540,722 - ABID97_RS21945 0.88 -2.3
4,540,722 - ABID97_RS21945 0.88 -0.8
4,540,910 + -0.6
4,540,910 + +0.2
4,540,910 + -0.4
4,541,064 - ABID97_RS21950 0.19 -0.2
4,541,372 + ABID97_RS21950 0.55 -0.5
4,541,372 + ABID97_RS21950 0.55 -1.8
4,541,372 + ABID97_RS21950 0.55 +0.1
4,541,373 - ABID97_RS21950 0.55 -0.6
4,541,916 + ABID97_RS21955 0.22 -0.4
4,541,916 + ABID97_RS21955 0.22 +0.2
4,542,058 - ABID97_RS21955 0.42 +2.0
4,542,284 + ABID97_RS21955 0.73 +1.0
4,542,285 + +2.1
4,542,286 - ABID97_RS21955 0.74 -0.6
4,542,286 - ABID97_RS21955 0.74 -0.5
4,542,286 - ABID97_RS21955 0.74 -0.3
4,542,286 - ABID97_RS21955 0.74 -0.8
4,542,318 + ABID97_RS21955 0.78 +0.3
4,542,318 + ABID97_RS21955 0.78 +0.3
4,542,376 - ABID97_RS21955 0.86 -0.5
4,542,454 - +0.3
4,542,520 + -0.5

Or see this region's nucleotide sequence