Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20370 and ABID97_RS20375 are separated by 125 nucleotides ABID97_RS20375 and ABID97_RS20380 are separated by 57 nucleotides ABID97_RS20380 and ABID97_RS20385 are separated by 1 nucleotides
ABID97_RS20370: ABID97_RS20370 - branched-chain amino acid ABC transporter permease, at 4,204,713 to 4,205,588
_RS20370
ABID97_RS20375: ABID97_RS20375 - ABC transporter substrate-binding protein, at 4,205,714 to 4,206,910
_RS20375
ABID97_RS20380: ABID97_RS20380 - ABC transporter ATP-binding protein, at 4,206,968 to 4,207,675
_RS20380
ABID97_RS20385: ABID97_RS20385 - ABC transporter ATP-binding protein, at 4,207,677 to 4,208,447
_RS20385
Position (kb) 4205
4206
4207 Strain fitness (log2 ratio) -1
0
1 at 4204.935 kb on + strand, within ABID97_RS20370 at 4205.105 kb on - strand, within ABID97_RS20370 at 4205.155 kb on + strand, within ABID97_RS20370 at 4205.215 kb on + strand, within ABID97_RS20370 at 4205.396 kb on - strand, within ABID97_RS20370 at 4205.411 kb on - strand, within ABID97_RS20370 at 4205.890 kb on - strand, within ABID97_RS20375 at 4206.039 kb on + strand, within ABID97_RS20375 at 4206.393 kb on + strand, within ABID97_RS20375 at 4206.393 kb on + strand, within ABID97_RS20375 at 4206.792 kb on + strand at 4206.970 kb on - strand at 4207.120 kb on - strand, within ABID97_RS20380 at 4207.321 kb on - strand, within ABID97_RS20380 at 4207.428 kb on + strand, within ABID97_RS20380 at 4207.635 kb on + strand at 4207.717 kb on + strand at 4207.718 kb on - strand at 4207.718 kb on - strand at 4207.718 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 4,204,935 + ABID97_RS20370 0.25 +0.7 4,205,105 - ABID97_RS20370 0.45 +0.4 4,205,155 + ABID97_RS20370 0.50 +0.2 4,205,215 + ABID97_RS20370 0.57 +0.6 4,205,396 - ABID97_RS20370 0.78 -0.5 4,205,411 - ABID97_RS20370 0.80 +0.1 4,205,890 - ABID97_RS20375 0.15 -0.3 4,206,039 + ABID97_RS20375 0.27 -0.8 4,206,393 + ABID97_RS20375 0.57 -0.9 4,206,393 + ABID97_RS20375 0.57 -1.2 4,206,792 + -0.3 4,206,970 - -0.1 4,207,120 - ABID97_RS20380 0.21 -0.3 4,207,321 - ABID97_RS20380 0.50 +0.1 4,207,428 + ABID97_RS20380 0.65 +0.1 4,207,635 + +0.1 4,207,717 + -0.1 4,207,718 - +1.0 4,207,718 - +0.2 4,207,718 - -0.1
Or see this region's nucleotide sequence