Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS18820 and ABID97_RS18825 are separated by 19 nucleotides ABID97_RS18825 and ABID97_RS18830 are separated by 2 nucleotides ABID97_RS18830 and ABID97_RS18835 are separated by 12 nucleotides
ABID97_RS18820: ABID97_RS18820 - PrpF domain-containing protein, at 3,876,465 to 3,877,601
_RS18820
ABID97_RS18825: ABID97_RS18825 - tripartite tricarboxylate transporter substrate binding protein, at 3,877,621 to 3,878,589
_RS18825
ABID97_RS18830: ABID97_RS18830 - FCD domain-containing protein, at 3,878,592 to 3,879,305
_RS18830
ABID97_RS18835: ABID97_RS18835 - oxaloacetate decarboxylase, at 3,879,318 to 3,880,184
_RS18835
Position (kb) 3877
3878
3879 Strain fitness (log2 ratio) -1
0
1
2 at 3876.635 kb on - strand, within ABID97_RS18820 at 3876.739 kb on - strand, within ABID97_RS18820 at 3876.739 kb on - strand, within ABID97_RS18820 at 3878.077 kb on + strand, within ABID97_RS18825 at 3878.157 kb on + strand, within ABID97_RS18825 at 3878.165 kb on - strand, within ABID97_RS18825 at 3879.261 kb on + strand at 3879.261 kb on + strand at 3879.262 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 3,876,635 - ABID97_RS18820 0.15 -0.5 3,876,739 - ABID97_RS18820 0.24 -0.3 3,876,739 - ABID97_RS18820 0.24 +1.9 3,878,077 + ABID97_RS18825 0.47 -0.7 3,878,157 + ABID97_RS18825 0.55 -0.2 3,878,165 - ABID97_RS18825 0.56 -0.6 3,879,261 + -0.4 3,879,261 + +0.7 3,879,262 - +0.1
Or see this region's nucleotide sequence