Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18505

Experiment: Glucuronamide (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS18500 and ABID97_RS18505 are separated by 36 nucleotidesABID97_RS18505 and ABID97_RS18510 are separated by 6 nucleotides ABID97_RS18500: ABID97_RS18500 - CaiB/BaiF CoA-transferase family protein, at 3,812,833 to 3,814,005 _RS18500 ABID97_RS18505: ABID97_RS18505 - transglutaminase family protein, at 3,814,042 to 3,814,719 _RS18505 ABID97_RS18510: ABID97_RS18510 - acyl-CoA dehydrogenase family protein, at 3,814,726 to 3,815,889 _RS18510 Position (kb) 3814 3815Strain fitness (log2 ratio) -2 -1 0 1at 3813.281 kb on + strand, within ABID97_RS18500at 3813.302 kb on + strand, within ABID97_RS18500at 3813.302 kb on + strand, within ABID97_RS18500at 3813.302 kb on + strand, within ABID97_RS18500at 3813.594 kb on - strand, within ABID97_RS18500at 3813.594 kb on - strand, within ABID97_RS18500at 3813.689 kb on - strand, within ABID97_RS18500at 3814.082 kb on + strandat 3814.152 kb on - strand, within ABID97_RS18505at 3814.863 kb on + strand, within ABID97_RS18510at 3815.069 kb on + strand, within ABID97_RS18510at 3815.069 kb on + strand, within ABID97_RS18510at 3815.162 kb on + strand, within ABID97_RS18510at 3815.162 kb on + strand, within ABID97_RS18510at 3815.537 kb on + strand, within ABID97_RS18510at 3815.584 kb on - strand, within ABID97_RS18510

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
remove
3,813,281 + ABID97_RS18500 0.38 -0.4
3,813,302 + ABID97_RS18500 0.40 -1.1
3,813,302 + ABID97_RS18500 0.40 -0.1
3,813,302 + ABID97_RS18500 0.40 -0.2
3,813,594 - ABID97_RS18500 0.65 -0.2
3,813,594 - ABID97_RS18500 0.65 -0.7
3,813,689 - ABID97_RS18500 0.73 +0.0
3,814,082 + +0.1
3,814,152 - ABID97_RS18505 0.16 -1.8
3,814,863 + ABID97_RS18510 0.12 -0.7
3,815,069 + ABID97_RS18510 0.29 +1.0
3,815,069 + ABID97_RS18510 0.29 -0.5
3,815,162 + ABID97_RS18510 0.37 -0.9
3,815,162 + ABID97_RS18510 0.37 +0.0
3,815,537 + ABID97_RS18510 0.70 -0.5
3,815,584 - ABID97_RS18510 0.74 -1.6

Or see this region's nucleotide sequence