Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17640

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17630 and ABID97_RS17635 overlap by 4 nucleotidesABID97_RS17635 and ABID97_RS17640 overlap by 4 nucleotidesABID97_RS17640 and ABID97_RS17645 overlap by 4 nucleotidesABID97_RS17645 and ABID97_RS17650 are separated by 36 nucleotidesABID97_RS17650 and ABID97_RS17655 are separated by 9 nucleotides ABID97_RS17630: ABID97_RS17630 - squalene synthase HpnC, at 3,643,892 to 3,644,749 _RS17630 ABID97_RS17635: ABID97_RS17635 - presqualene diphosphate synthase HpnD, at 3,644,746 to 3,645,585 _RS17635 ABID97_RS17640: ABID97_RS17640 - hydroxysqualene dehydroxylase HpnE, at 3,645,582 to 3,646,841 _RS17640 ABID97_RS17645: ABID97_RS17645 - hypothetical protein, at 3,646,838 to 3,647,140 _RS17645 ABID97_RS17650: ABID97_RS17650 - NIPSNAP family protein, at 3,647,177 to 3,647,482 _RS17650 ABID97_RS17655: ABID97_RS17655 - HAD-IA family hydrolase, at 3,647,492 to 3,648,223 _RS17655 Position (kb) 3645 3646 3647Strain fitness (log2 ratio) -2 -1 0 1at 3644.762 kb on - strandat 3644.762 kb on - strandat 3644.762 kb on - strandat 3644.762 kb on - strandat 3644.762 kb on - strandat 3644.766 kb on - strandat 3644.766 kb on - strandat 3644.800 kb on + strandat 3644.854 kb on + strand, within ABID97_RS17635at 3644.854 kb on + strand, within ABID97_RS17635at 3644.855 kb on - strand, within ABID97_RS17635at 3645.082 kb on + strand, within ABID97_RS17635at 3645.269 kb on - strand, within ABID97_RS17635at 3645.463 kb on + strand, within ABID97_RS17635at 3645.464 kb on - strand, within ABID97_RS17635at 3646.440 kb on + strand, within ABID97_RS17640at 3646.441 kb on - strand, within ABID97_RS17640at 3646.773 kb on + strandat 3647.291 kb on + strand, within ABID97_RS17650at 3647.292 kb on - strand, within ABID97_RS17650at 3647.417 kb on + strand, within ABID97_RS17650at 3647.417 kb on + strand, within ABID97_RS17650at 3647.418 kb on - strand, within ABID97_RS17650

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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3,644,762 - -0.6
3,644,762 - -2.0
3,644,762 - -1.1
3,644,762 - -0.6
3,644,762 - -1.8
3,644,766 - -0.4
3,644,766 - -0.8
3,644,800 + -1.0
3,644,854 + ABID97_RS17635 0.13 -1.6
3,644,854 + ABID97_RS17635 0.13 -0.2
3,644,855 - ABID97_RS17635 0.13 -0.5
3,645,082 + ABID97_RS17635 0.40 +0.5
3,645,269 - ABID97_RS17635 0.62 -0.3
3,645,463 + ABID97_RS17635 0.85 -1.4
3,645,464 - ABID97_RS17635 0.85 +1.1
3,646,440 + ABID97_RS17640 0.68 -1.8
3,646,441 - ABID97_RS17640 0.68 -0.1
3,646,773 + -2.6
3,647,291 + ABID97_RS17650 0.37 +0.2
3,647,292 - ABID97_RS17650 0.38 +0.2
3,647,417 + ABID97_RS17650 0.78 +0.1
3,647,417 + ABID97_RS17650 0.78 -0.9
3,647,418 - ABID97_RS17650 0.79 -0.4

Or see this region's nucleotide sequence