Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS17630 and ABID97_RS17635 overlap by 4 nucleotides ABID97_RS17635 and ABID97_RS17640 overlap by 4 nucleotides ABID97_RS17640 and ABID97_RS17645 overlap by 4 nucleotides ABID97_RS17645 and ABID97_RS17650 are separated by 36 nucleotides ABID97_RS17650 and ABID97_RS17655 are separated by 9 nucleotides
ABID97_RS17630: ABID97_RS17630 - squalene synthase HpnC, at 3,643,892 to 3,644,749
_RS17630
ABID97_RS17635: ABID97_RS17635 - presqualene diphosphate synthase HpnD, at 3,644,746 to 3,645,585
_RS17635
ABID97_RS17640: ABID97_RS17640 - hydroxysqualene dehydroxylase HpnE, at 3,645,582 to 3,646,841
_RS17640
ABID97_RS17645: ABID97_RS17645 - hypothetical protein, at 3,646,838 to 3,647,140
_RS17645
ABID97_RS17650: ABID97_RS17650 - NIPSNAP family protein, at 3,647,177 to 3,647,482
_RS17650
ABID97_RS17655: ABID97_RS17655 - HAD-IA family hydrolase, at 3,647,492 to 3,648,223
_RS17655
Position (kb)
3645
3646
3647 Strain fitness (log2 ratio)
-2
-1
0
1 at 3644.762 kb on - strand at 3644.762 kb on - strand at 3644.762 kb on - strand at 3644.762 kb on - strand at 3644.762 kb on - strand at 3644.766 kb on - strand at 3644.766 kb on - strand at 3644.800 kb on + strand at 3644.854 kb on + strand, within ABID97_RS17635 at 3644.854 kb on + strand, within ABID97_RS17635 at 3644.855 kb on - strand, within ABID97_RS17635 at 3645.082 kb on + strand, within ABID97_RS17635 at 3645.269 kb on - strand, within ABID97_RS17635 at 3645.463 kb on + strand, within ABID97_RS17635 at 3645.464 kb on - strand, within ABID97_RS17635 at 3646.440 kb on + strand, within ABID97_RS17640 at 3646.441 kb on - strand, within ABID97_RS17640 at 3646.773 kb on + strand at 3647.291 kb on + strand, within ABID97_RS17650 at 3647.292 kb on - strand, within ABID97_RS17650 at 3647.417 kb on + strand, within ABID97_RS17650 at 3647.417 kb on + strand, within ABID97_RS17650 at 3647.418 kb on - strand, within ABID97_RS17650
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 3,644,762 - -0.6 3,644,762 - -2.0 3,644,762 - -1.1 3,644,762 - -0.6 3,644,762 - -1.8 3,644,766 - -0.4 3,644,766 - -0.8 3,644,800 + -1.0 3,644,854 + ABID97_RS17635 0.13 -1.6 3,644,854 + ABID97_RS17635 0.13 -0.2 3,644,855 - ABID97_RS17635 0.13 -0.5 3,645,082 + ABID97_RS17635 0.40 +0.5 3,645,269 - ABID97_RS17635 0.62 -0.3 3,645,463 + ABID97_RS17635 0.85 -1.4 3,645,464 - ABID97_RS17635 0.85 +1.1 3,646,440 + ABID97_RS17640 0.68 -1.8 3,646,441 - ABID97_RS17640 0.68 -0.1 3,646,773 + -2.6 3,647,291 + ABID97_RS17650 0.37 +0.2 3,647,292 - ABID97_RS17650 0.38 +0.2 3,647,417 + ABID97_RS17650 0.78 +0.1 3,647,417 + ABID97_RS17650 0.78 -0.9 3,647,418 - ABID97_RS17650 0.79 -0.4
Or see this region's nucleotide sequence