Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15175

Experiment: Glucuronamide (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS15170 and ABID97_RS15175 are separated by 1 nucleotidesABID97_RS15175 and ABID97_RS15180 overlap by 8 nucleotidesABID97_RS15180 and ABID97_RS15185 overlap by 4 nucleotides ABID97_RS15170: ABID97_RS15170 - hypothetical protein, at 3,143,958 to 3,145,034 _RS15170 ABID97_RS15175: ABID97_RS15175 - phage tail protein I, at 3,145,036 to 3,145,602 _RS15175 ABID97_RS15180: ABID97_RS15180 - baseplate J/gp47 family protein, at 3,145,595 to 3,146,479 _RS15180 ABID97_RS15185: ABID97_RS15185 - GPW/gp25 family protein, at 3,146,476 to 3,146,838 _RS15185 Position (kb) 3145 3146Strain fitness (log2 ratio) -2 -1 0 1at 3144.251 kb on - strand, within ABID97_RS15170at 3144.251 kb on - strand, within ABID97_RS15170at 3144.365 kb on - strand, within ABID97_RS15170at 3144.589 kb on - strand, within ABID97_RS15170at 3144.845 kb on - strand, within ABID97_RS15170at 3144.992 kb on - strandat 3144.992 kb on - strandat 3144.992 kb on - strandat 3145.107 kb on - strand, within ABID97_RS15175at 3145.211 kb on + strand, within ABID97_RS15175at 3145.211 kb on + strand, within ABID97_RS15175at 3146.198 kb on + strand, within ABID97_RS15180at 3146.424 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
remove
3,144,251 - ABID97_RS15170 0.27 +0.3
3,144,251 - ABID97_RS15170 0.27 +0.3
3,144,365 - ABID97_RS15170 0.38 +0.5
3,144,589 - ABID97_RS15170 0.59 +0.5
3,144,845 - ABID97_RS15170 0.82 -0.2
3,144,992 - -0.3
3,144,992 - +0.1
3,144,992 - +0.4
3,145,107 - ABID97_RS15175 0.13 -1.2
3,145,211 + ABID97_RS15175 0.31 -1.8
3,145,211 + ABID97_RS15175 0.31 +0.0
3,146,198 + ABID97_RS15180 0.68 +0.4
3,146,424 + +0.2

Or see this region's nucleotide sequence