Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13865 and ABID97_RS13870 are separated by 2 nucleotides ABID97_RS13870 and ABID97_RS13875 are separated by 22 nucleotides ABID97_RS13875 and ABID97_RS13880 overlap by 11 nucleotides ABID97_RS13880 and ABID97_RS13885 overlap by 4 nucleotides
ABID97_RS13865: ABID97_RS13865 - hypothetical protein, at 2,880,626 to 2,882,515
_RS13865
ABID97_RS13870: ABID97_RS13870 - hypothetical protein, at 2,882,518 to 2,882,751
_RS13870
ABID97_RS13875: ABID97_RS13875 - hypothetical protein, at 2,882,774 to 2,883,142
_RS13875
ABID97_RS13880: ABID97_RS13880 - hypothetical protein, at 2,883,132 to 2,883,524
_RS13880
ABID97_RS13885: ABID97_RS13885 - glycoside hydrolase family 19 protein, at 2,883,521 to 2,884,105
_RS13885
Position (kb)
2882
2883 Strain fitness (log2 ratio)
-2
-1
0
1 at 2881.814 kb on + strand, within ABID97_RS13865 at 2881.815 kb on - strand, within ABID97_RS13865 at 2881.888 kb on + strand, within ABID97_RS13865 at 2882.105 kb on + strand, within ABID97_RS13865 at 2882.105 kb on + strand, within ABID97_RS13865 at 2882.106 kb on - strand, within ABID97_RS13865 at 2882.165 kb on + strand, within ABID97_RS13865 at 2882.183 kb on + strand, within ABID97_RS13865 at 2882.243 kb on + strand, within ABID97_RS13865 at 2882.244 kb on - strand, within ABID97_RS13865 at 2882.684 kb on - strand, within ABID97_RS13870 at 2882.684 kb on - strand, within ABID97_RS13870 at 2882.684 kb on - strand, within ABID97_RS13870 at 2882.684 kb on - strand, within ABID97_RS13870 at 2882.897 kb on - strand, within ABID97_RS13875 at 2883.274 kb on - strand, within ABID97_RS13880 at 2883.581 kb on + strand, within ABID97_RS13885 at 2883.582 kb on - strand, within ABID97_RS13885 at 2883.707 kb on + strand, within ABID97_RS13885 at 2883.707 kb on + strand, within ABID97_RS13885 at 2883.708 kb on - strand, within ABID97_RS13885 at 2883.708 kb on - strand, within ABID97_RS13885
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 2,881,814 + ABID97_RS13865 0.63 -1.9 2,881,815 - ABID97_RS13865 0.63 -0.2 2,881,888 + ABID97_RS13865 0.67 -2.3 2,882,105 + ABID97_RS13865 0.78 -0.8 2,882,105 + ABID97_RS13865 0.78 -0.3 2,882,106 - ABID97_RS13865 0.78 -0.3 2,882,165 + ABID97_RS13865 0.81 +1.1 2,882,183 + ABID97_RS13865 0.82 -1.3 2,882,243 + ABID97_RS13865 0.86 -0.1 2,882,244 - ABID97_RS13865 0.86 -0.3 2,882,684 - ABID97_RS13870 0.71 -0.9 2,882,684 - ABID97_RS13870 0.71 -1.5 2,882,684 - ABID97_RS13870 0.71 -0.8 2,882,684 - ABID97_RS13870 0.71 -1.0 2,882,897 - ABID97_RS13875 0.33 +0.7 2,883,274 - ABID97_RS13880 0.36 +0.7 2,883,581 + ABID97_RS13885 0.10 -0.4 2,883,582 - ABID97_RS13885 0.10 -0.1 2,883,707 + ABID97_RS13885 0.32 +0.6 2,883,707 + ABID97_RS13885 0.32 -0.8 2,883,708 - ABID97_RS13885 0.32 -0.2 2,883,708 - ABID97_RS13885 0.32 +0.0
Or see this region's nucleotide sequence