Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13870

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13865 and ABID97_RS13870 are separated by 2 nucleotidesABID97_RS13870 and ABID97_RS13875 are separated by 22 nucleotidesABID97_RS13875 and ABID97_RS13880 overlap by 11 nucleotidesABID97_RS13880 and ABID97_RS13885 overlap by 4 nucleotides ABID97_RS13865: ABID97_RS13865 - hypothetical protein, at 2,880,626 to 2,882,515 _RS13865 ABID97_RS13870: ABID97_RS13870 - hypothetical protein, at 2,882,518 to 2,882,751 _RS13870 ABID97_RS13875: ABID97_RS13875 - hypothetical protein, at 2,882,774 to 2,883,142 _RS13875 ABID97_RS13880: ABID97_RS13880 - hypothetical protein, at 2,883,132 to 2,883,524 _RS13880 ABID97_RS13885: ABID97_RS13885 - glycoside hydrolase family 19 protein, at 2,883,521 to 2,884,105 _RS13885 Position (kb) 2882 2883Strain fitness (log2 ratio) -2 -1 0 1at 2881.814 kb on + strand, within ABID97_RS13865at 2881.815 kb on - strand, within ABID97_RS13865at 2881.888 kb on + strand, within ABID97_RS13865at 2882.105 kb on + strand, within ABID97_RS13865at 2882.105 kb on + strand, within ABID97_RS13865at 2882.106 kb on - strand, within ABID97_RS13865at 2882.165 kb on + strand, within ABID97_RS13865at 2882.183 kb on + strand, within ABID97_RS13865at 2882.243 kb on + strand, within ABID97_RS13865at 2882.244 kb on - strand, within ABID97_RS13865at 2882.684 kb on - strand, within ABID97_RS13870at 2882.684 kb on - strand, within ABID97_RS13870at 2882.684 kb on - strand, within ABID97_RS13870at 2882.684 kb on - strand, within ABID97_RS13870at 2882.897 kb on - strand, within ABID97_RS13875at 2883.274 kb on - strand, within ABID97_RS13880at 2883.581 kb on + strand, within ABID97_RS13885at 2883.582 kb on - strand, within ABID97_RS13885at 2883.707 kb on + strand, within ABID97_RS13885at 2883.707 kb on + strand, within ABID97_RS13885at 2883.708 kb on - strand, within ABID97_RS13885at 2883.708 kb on - strand, within ABID97_RS13885

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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2,881,814 + ABID97_RS13865 0.63 -1.9
2,881,815 - ABID97_RS13865 0.63 -0.2
2,881,888 + ABID97_RS13865 0.67 -2.3
2,882,105 + ABID97_RS13865 0.78 -0.8
2,882,105 + ABID97_RS13865 0.78 -0.3
2,882,106 - ABID97_RS13865 0.78 -0.3
2,882,165 + ABID97_RS13865 0.81 +1.1
2,882,183 + ABID97_RS13865 0.82 -1.3
2,882,243 + ABID97_RS13865 0.86 -0.1
2,882,244 - ABID97_RS13865 0.86 -0.3
2,882,684 - ABID97_RS13870 0.71 -0.9
2,882,684 - ABID97_RS13870 0.71 -1.5
2,882,684 - ABID97_RS13870 0.71 -0.8
2,882,684 - ABID97_RS13870 0.71 -1.0
2,882,897 - ABID97_RS13875 0.33 +0.7
2,883,274 - ABID97_RS13880 0.36 +0.7
2,883,581 + ABID97_RS13885 0.10 -0.4
2,883,582 - ABID97_RS13885 0.10 -0.1
2,883,707 + ABID97_RS13885 0.32 +0.6
2,883,707 + ABID97_RS13885 0.32 -0.8
2,883,708 - ABID97_RS13885 0.32 -0.2
2,883,708 - ABID97_RS13885 0.32 +0.0

Or see this region's nucleotide sequence