Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13465

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13460 and ABID97_RS13465 are separated by 277 nucleotidesABID97_RS13465 and ABID97_RS13470 are separated by 9 nucleotidesABID97_RS13470 and ABID97_RS13475 are separated by 22 nucleotides ABID97_RS13460: ABID97_RS13460 - tripartite tricarboxylate transporter substrate binding protein, at 2,801,749 to 2,802,729 _RS13460 ABID97_RS13465: ABID97_RS13465 - VOC family protein, at 2,803,007 to 2,803,957 _RS13465 ABID97_RS13470: ABID97_RS13470 - Rieske 2Fe-2S domain-containing protein, at 2,803,967 to 2,804,314 _RS13470 ABID97_RS13475: ABID97_RS13475 - MFS transporter, at 2,804,337 to 2,805,515 _RS13475 Position (kb) 2803 2804Strain fitness (log2 ratio) -1 0 1at 2802.425 kb on + strand, within ABID97_RS13460at 2803.524 kb on - strand, within ABID97_RS13465at 2803.977 kb on - strandat 2804.177 kb on + strand, within ABID97_RS13470

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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2,802,425 + ABID97_RS13460 0.69 -0.4
2,803,524 - ABID97_RS13465 0.54 -1.0
2,803,977 - -0.1
2,804,177 + ABID97_RS13470 0.60 +0.0

Or see this region's nucleotide sequence