Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13420 and ABID97_RS13425 are separated by 80 nucleotides ABID97_RS13425 and ABID97_RS13430 are separated by 17 nucleotides ABID97_RS13430 and ABID97_RS13435 are separated by 229 nucleotides
ABID97_RS13420: ABID97_RS13420 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 2,794,581 to 2,795,663
_RS13420
ABID97_RS13425: ABID97_RS13425 - PaaI family thioesterase, at 2,795,744 to 2,796,211
_RS13425
ABID97_RS13430: ABID97_RS13430 - 3-keto-5-aminohexanoate cleavage protein, at 2,796,229 to 2,797,113
_RS13430
ABID97_RS13435: ABID97_RS13435 - fumarylacetoacetate hydrolase family protein, at 2,797,343 to 2,798,341
_RS13435
Position (kb)
2796
2797
2798 Strain fitness (log2 ratio)
-1
0
1 at 2795.239 kb on + strand, within ABID97_RS13420 at 2796.914 kb on + strand, within ABID97_RS13430 at 2796.915 kb on - strand, within ABID97_RS13430 at 2797.115 kb on + strand at 2797.115 kb on + strand at 2797.116 kb on - strand at 2797.140 kb on + strand at 2797.140 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 2,795,239 + ABID97_RS13420 0.61 +0.0 2,796,914 + ABID97_RS13430 0.77 -0.7 2,796,915 - ABID97_RS13430 0.78 -1.1 2,797,115 + -0.4 2,797,115 + +0.3 2,797,116 - +0.5 2,797,140 + +0.1 2,797,140 + +0.6
Or see this region's nucleotide sequence