Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13430

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13420 and ABID97_RS13425 are separated by 80 nucleotidesABID97_RS13425 and ABID97_RS13430 are separated by 17 nucleotidesABID97_RS13430 and ABID97_RS13435 are separated by 229 nucleotides ABID97_RS13420: ABID97_RS13420 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 2,794,581 to 2,795,663 _RS13420 ABID97_RS13425: ABID97_RS13425 - PaaI family thioesterase, at 2,795,744 to 2,796,211 _RS13425 ABID97_RS13430: ABID97_RS13430 - 3-keto-5-aminohexanoate cleavage protein, at 2,796,229 to 2,797,113 _RS13430 ABID97_RS13435: ABID97_RS13435 - fumarylacetoacetate hydrolase family protein, at 2,797,343 to 2,798,341 _RS13435 Position (kb) 2796 2797 2798Strain fitness (log2 ratio) -1 0 1at 2795.239 kb on + strand, within ABID97_RS13420at 2796.914 kb on + strand, within ABID97_RS13430at 2796.915 kb on - strand, within ABID97_RS13430at 2797.115 kb on + strandat 2797.115 kb on + strandat 2797.116 kb on - strandat 2797.140 kb on + strandat 2797.140 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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2,795,239 + ABID97_RS13420 0.61 +0.0
2,796,914 + ABID97_RS13430 0.77 -0.7
2,796,915 - ABID97_RS13430 0.78 -1.1
2,797,115 + -0.4
2,797,115 + +0.3
2,797,116 - +0.5
2,797,140 + +0.1
2,797,140 + +0.6

Or see this region's nucleotide sequence