Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13310

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13300 and ABID97_RS13305 are separated by 18 nucleotidesABID97_RS13305 and ABID97_RS13310 are separated by 67 nucleotidesABID97_RS13310 and ABID97_RS13315 overlap by 29 nucleotidesABID97_RS13315 and ABID97_RS13320 are separated by 35 nucleotidesABID97_RS13320 and ABID97_RS13325 are separated by 31 nucleotides ABID97_RS13300: ABID97_RS13300 - amino acid ABC transporter permease, at 2,770,989 to 2,772,080 _RS13300 ABID97_RS13305: ABID97_RS13305 - amino acid ABC transporter ATP-binding protein, at 2,772,099 to 2,772,839 _RS13305 ABID97_RS13310: ABID97_RS13310 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 2,772,907 to 2,774,070 _RS13310 ABID97_RS13315: ABID97_RS13315 - hypothetical protein, at 2,774,042 to 2,774,113 _RS13315 ABID97_RS13320: ABID97_RS13320 - LysR family transcriptional regulator, at 2,774,149 to 2,775,036 _RS13320 ABID97_RS13325: ABID97_RS13325 - antibiotic biosynthesis monooxygenase, at 2,775,068 to 2,775,385 _RS13325 Position (kb) 2772 2773 2774 2775Strain fitness (log2 ratio) -1 0 1at 2772.016 kb on - strandat 2772.037 kb on + strandat 2772.045 kb on + strandat 2772.507 kb on + strand, within ABID97_RS13305at 2772.837 kb on + strandat 2772.902 kb on + strandat 2773.003 kb on + strandat 2773.004 kb on - strandat 2773.544 kb on - strand, within ABID97_RS13310at 2773.786 kb on + strand, within ABID97_RS13310at 2774.448 kb on - strand, within ABID97_RS13320at 2774.726 kb on + strand, within ABID97_RS13320at 2774.736 kb on + strand, within ABID97_RS13320at 2774.737 kb on - strand, within ABID97_RS13320at 2775.009 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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2,772,016 - -0.1
2,772,037 + +0.0
2,772,045 + -0.1
2,772,507 + ABID97_RS13305 0.55 +0.1
2,772,837 + +0.3
2,772,902 + -0.4
2,773,003 + -0.1
2,773,004 - -0.5
2,773,544 - ABID97_RS13310 0.55 +0.8
2,773,786 + ABID97_RS13310 0.76 +0.4
2,774,448 - ABID97_RS13320 0.34 +1.4
2,774,726 + ABID97_RS13320 0.65 -0.6
2,774,736 + ABID97_RS13320 0.66 -0.7
2,774,737 - ABID97_RS13320 0.66 -0.4
2,775,009 - -0.7

Or see this region's nucleotide sequence