Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13300 and ABID97_RS13305 are separated by 18 nucleotides ABID97_RS13305 and ABID97_RS13310 are separated by 67 nucleotides ABID97_RS13310 and ABID97_RS13315 overlap by 29 nucleotides ABID97_RS13315 and ABID97_RS13320 are separated by 35 nucleotides ABID97_RS13320 and ABID97_RS13325 are separated by 31 nucleotides
ABID97_RS13300: ABID97_RS13300 - amino acid ABC transporter permease, at 2,770,989 to 2,772,080
_RS13300
ABID97_RS13305: ABID97_RS13305 - amino acid ABC transporter ATP-binding protein, at 2,772,099 to 2,772,839
_RS13305
ABID97_RS13310: ABID97_RS13310 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 2,772,907 to 2,774,070
_RS13310
ABID97_RS13315: ABID97_RS13315 - hypothetical protein, at 2,774,042 to 2,774,113
_RS13315
ABID97_RS13320: ABID97_RS13320 - LysR family transcriptional regulator, at 2,774,149 to 2,775,036
_RS13320
ABID97_RS13325: ABID97_RS13325 - antibiotic biosynthesis monooxygenase, at 2,775,068 to 2,775,385
_RS13325
Position (kb)
2772
2773
2774
2775 Strain fitness (log2 ratio)
-1
0
1 at 2772.016 kb on - strand at 2772.037 kb on + strand at 2772.045 kb on + strand at 2772.507 kb on + strand, within ABID97_RS13305 at 2772.837 kb on + strand at 2772.902 kb on + strand at 2773.003 kb on + strand at 2773.004 kb on - strand at 2773.544 kb on - strand, within ABID97_RS13310 at 2773.786 kb on + strand, within ABID97_RS13310 at 2774.448 kb on - strand, within ABID97_RS13320 at 2774.726 kb on + strand, within ABID97_RS13320 at 2774.736 kb on + strand, within ABID97_RS13320 at 2774.737 kb on - strand, within ABID97_RS13320 at 2775.009 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 2,772,016 - -0.1 2,772,037 + +0.0 2,772,045 + -0.1 2,772,507 + ABID97_RS13305 0.55 +0.1 2,772,837 + +0.3 2,772,902 + -0.4 2,773,003 + -0.1 2,773,004 - -0.5 2,773,544 - ABID97_RS13310 0.55 +0.8 2,773,786 + ABID97_RS13310 0.76 +0.4 2,774,448 - ABID97_RS13320 0.34 +1.4 2,774,726 + ABID97_RS13320 0.65 -0.6 2,774,736 + ABID97_RS13320 0.66 -0.7 2,774,737 - ABID97_RS13320 0.66 -0.4 2,775,009 - -0.7
Or see this region's nucleotide sequence