Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS12110 and ABID97_RS12115 are separated by 144 nucleotides ABID97_RS12115 and ABID97_RS12120 are separated by 43 nucleotides ABID97_RS12120 and ABID97_RS12125 are separated by 264 nucleotides ABID97_RS12125 and ABID97_RS12130 are separated by 30 nucleotides
ABID97_RS12110: ABID97_RS12110 - phosphoribosyltransferase family protein, at 2,505,763 to 2,506,428
_RS12110
ABID97_RS12115: ABID97_RS12115 - Hsp20/alpha crystallin family protein, at 2,506,573 to 2,506,980
_RS12115
ABID97_RS12120: ABID97_RS12120 - Hsp20/alpha crystallin family protein, at 2,507,024 to 2,507,461
_RS12120
ABID97_RS12125: ABID97_RS12125 - hypothetical protein, at 2,507,726 to 2,508,082
_RS12125
ABID97_RS12130: ABID97_RS12130 - hypothetical protein, at 2,508,113 to 2,508,433
_RS12130
Position (kb)
2507
2508 Strain fitness (log2 ratio)
-2
-1
0
1 at 2506.301 kb on + strand, within ABID97_RS12110 at 2506.451 kb on + strand at 2506.476 kb on + strand at 2506.499 kb on - strand at 2506.499 kb on - strand at 2506.732 kb on - strand, within ABID97_RS12115 at 2506.847 kb on + strand, within ABID97_RS12115 at 2506.848 kb on - strand, within ABID97_RS12115 at 2506.848 kb on - strand, within ABID97_RS12115 at 2506.848 kb on - strand, within ABID97_RS12115 at 2506.911 kb on - strand, within ABID97_RS12115 at 2507.026 kb on - strand at 2507.097 kb on + strand, within ABID97_RS12120 at 2507.145 kb on - strand, within ABID97_RS12120 at 2507.301 kb on + strand, within ABID97_RS12120 at 2507.302 kb on - strand, within ABID97_RS12120 at 2507.302 kb on - strand, within ABID97_RS12120 at 2507.457 kb on + strand at 2507.457 kb on + strand at 2507.457 kb on + strand at 2507.458 kb on - strand at 2507.458 kb on - strand at 2507.458 kb on - strand at 2507.458 kb on - strand at 2507.458 kb on - strand at 2507.458 kb on - strand at 2507.677 kb on + strand at 2507.678 kb on - strand at 2507.678 kb on - strand at 2507.898 kb on + strand, within ABID97_RS12125 at 2507.898 kb on + strand, within ABID97_RS12125 at 2507.899 kb on - strand, within ABID97_RS12125 at 2508.080 kb on + strand at 2508.132 kb on - strand at 2508.132 kb on - strand at 2508.132 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 2,506,301 + ABID97_RS12110 0.81 -1.4 2,506,451 + -0.1 2,506,476 + +0.4 2,506,499 - +0.3 2,506,499 - -0.0 2,506,732 - ABID97_RS12115 0.39 +0.1 2,506,847 + ABID97_RS12115 0.67 -0.2 2,506,848 - ABID97_RS12115 0.67 +0.2 2,506,848 - ABID97_RS12115 0.67 -0.4 2,506,848 - ABID97_RS12115 0.67 +0.3 2,506,911 - ABID97_RS12115 0.83 +0.1 2,507,026 - +0.0 2,507,097 + ABID97_RS12120 0.17 -0.9 2,507,145 - ABID97_RS12120 0.28 -0.2 2,507,301 + ABID97_RS12120 0.63 +0.3 2,507,302 - ABID97_RS12120 0.63 -1.1 2,507,302 - ABID97_RS12120 0.63 -2.6 2,507,457 + -0.6 2,507,457 + -0.1 2,507,457 + -0.1 2,507,458 - +0.2 2,507,458 - +0.1 2,507,458 - +0.8 2,507,458 - -1.0 2,507,458 - +0.5 2,507,458 - +0.4 2,507,677 + -0.6 2,507,678 - -0.7 2,507,678 - +0.4 2,507,898 + ABID97_RS12125 0.48 +0.2 2,507,898 + ABID97_RS12125 0.48 -0.2 2,507,899 - ABID97_RS12125 0.48 +0.1 2,508,080 + -0.6 2,508,132 - -0.2 2,508,132 - +0.2 2,508,132 - +0.2
Or see this region's nucleotide sequence