Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12120

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12110 and ABID97_RS12115 are separated by 144 nucleotidesABID97_RS12115 and ABID97_RS12120 are separated by 43 nucleotidesABID97_RS12120 and ABID97_RS12125 are separated by 264 nucleotidesABID97_RS12125 and ABID97_RS12130 are separated by 30 nucleotides ABID97_RS12110: ABID97_RS12110 - phosphoribosyltransferase family protein, at 2,505,763 to 2,506,428 _RS12110 ABID97_RS12115: ABID97_RS12115 - Hsp20/alpha crystallin family protein, at 2,506,573 to 2,506,980 _RS12115 ABID97_RS12120: ABID97_RS12120 - Hsp20/alpha crystallin family protein, at 2,507,024 to 2,507,461 _RS12120 ABID97_RS12125: ABID97_RS12125 - hypothetical protein, at 2,507,726 to 2,508,082 _RS12125 ABID97_RS12130: ABID97_RS12130 - hypothetical protein, at 2,508,113 to 2,508,433 _RS12130 Position (kb) 2507 2508Strain fitness (log2 ratio) -2 -1 0 1at 2506.301 kb on + strand, within ABID97_RS12110at 2506.451 kb on + strandat 2506.476 kb on + strandat 2506.499 kb on - strandat 2506.499 kb on - strandat 2506.732 kb on - strand, within ABID97_RS12115at 2506.847 kb on + strand, within ABID97_RS12115at 2506.848 kb on - strand, within ABID97_RS12115at 2506.848 kb on - strand, within ABID97_RS12115at 2506.848 kb on - strand, within ABID97_RS12115at 2506.911 kb on - strand, within ABID97_RS12115at 2507.026 kb on - strandat 2507.097 kb on + strand, within ABID97_RS12120at 2507.145 kb on - strand, within ABID97_RS12120at 2507.301 kb on + strand, within ABID97_RS12120at 2507.302 kb on - strand, within ABID97_RS12120at 2507.302 kb on - strand, within ABID97_RS12120at 2507.457 kb on + strandat 2507.457 kb on + strandat 2507.457 kb on + strandat 2507.458 kb on - strandat 2507.458 kb on - strandat 2507.458 kb on - strandat 2507.458 kb on - strandat 2507.458 kb on - strandat 2507.458 kb on - strandat 2507.677 kb on + strandat 2507.678 kb on - strandat 2507.678 kb on - strandat 2507.898 kb on + strand, within ABID97_RS12125at 2507.898 kb on + strand, within ABID97_RS12125at 2507.899 kb on - strand, within ABID97_RS12125at 2508.080 kb on + strandat 2508.132 kb on - strandat 2508.132 kb on - strandat 2508.132 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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2,506,301 + ABID97_RS12110 0.81 -1.4
2,506,451 + -0.1
2,506,476 + +0.4
2,506,499 - +0.3
2,506,499 - -0.0
2,506,732 - ABID97_RS12115 0.39 +0.1
2,506,847 + ABID97_RS12115 0.67 -0.2
2,506,848 - ABID97_RS12115 0.67 +0.2
2,506,848 - ABID97_RS12115 0.67 -0.4
2,506,848 - ABID97_RS12115 0.67 +0.3
2,506,911 - ABID97_RS12115 0.83 +0.1
2,507,026 - +0.0
2,507,097 + ABID97_RS12120 0.17 -0.9
2,507,145 - ABID97_RS12120 0.28 -0.2
2,507,301 + ABID97_RS12120 0.63 +0.3
2,507,302 - ABID97_RS12120 0.63 -1.1
2,507,302 - ABID97_RS12120 0.63 -2.6
2,507,457 + -0.6
2,507,457 + -0.1
2,507,457 + -0.1
2,507,458 - +0.2
2,507,458 - +0.1
2,507,458 - +0.8
2,507,458 - -1.0
2,507,458 - +0.5
2,507,458 - +0.4
2,507,677 + -0.6
2,507,678 - -0.7
2,507,678 - +0.4
2,507,898 + ABID97_RS12125 0.48 +0.2
2,507,898 + ABID97_RS12125 0.48 -0.2
2,507,899 - ABID97_RS12125 0.48 +0.1
2,508,080 + -0.6
2,508,132 - -0.2
2,508,132 - +0.2
2,508,132 - +0.2

Or see this region's nucleotide sequence