Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11355

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11350 and ABID97_RS11355 are separated by 19 nucleotidesABID97_RS11355 and ABID97_RS11360 overlap by 4 nucleotides ABID97_RS11350: ABID97_RS11350 - aldehyde dehydrogenase family protein, at 2,342,572 to 2,344,035 _RS11350 ABID97_RS11355: ABID97_RS11355 - acyl-CoA dehydrogenase family protein, at 2,344,055 to 2,345,227 _RS11355 ABID97_RS11360: ABID97_RS11360 - acyl-CoA dehydrogenase family protein, at 2,345,224 to 2,346,258 _RS11360 Position (kb) 2344 2345 2346Strain fitness (log2 ratio) -1 0 1at 2343.423 kb on - strand, within ABID97_RS11350at 2343.475 kb on + strand, within ABID97_RS11350at 2343.475 kb on + strand, within ABID97_RS11350at 2343.475 kb on + strand, within ABID97_RS11350at 2343.475 kb on + strand, within ABID97_RS11350at 2343.890 kb on + strandat 2344.012 kb on + strandat 2344.102 kb on - strandat 2344.531 kb on - strand, within ABID97_RS11355at 2344.583 kb on - strand, within ABID97_RS11355at 2344.732 kb on + strand, within ABID97_RS11355at 2345.731 kb on - strand, within ABID97_RS11360at 2345.881 kb on + strand, within ABID97_RS11360at 2346.127 kb on - strand, within ABID97_RS11360at 2346.187 kb on + strandat 2346.188 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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2,343,423 - ABID97_RS11350 0.58 -0.2
2,343,475 + ABID97_RS11350 0.62 -1.6
2,343,475 + ABID97_RS11350 0.62 +0.6
2,343,475 + ABID97_RS11350 0.62 -0.4
2,343,475 + ABID97_RS11350 0.62 +0.6
2,343,890 + -0.3
2,344,012 + -0.0
2,344,102 - +0.6
2,344,531 - ABID97_RS11355 0.41 -1.7
2,344,583 - ABID97_RS11355 0.45 +0.5
2,344,732 + ABID97_RS11355 0.58 -0.9
2,345,731 - ABID97_RS11360 0.49 -0.2
2,345,881 + ABID97_RS11360 0.63 -0.4
2,346,127 - ABID97_RS11360 0.87 -0.6
2,346,187 + -0.2
2,346,188 - +0.0

Or see this region's nucleotide sequence