Strain Fitness in Variovorax sp. OAS795 around ABID97_RS10305

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS10300 and ABID97_RS10305 are separated by 142 nucleotidesABID97_RS10305 and ABID97_RS10310 are separated by 37 nucleotides ABID97_RS10300: ABID97_RS10300 - archaetidylserine decarboxylase, at 2,138,793 to 2,139,644 _RS10300 ABID97_RS10305: ABID97_RS10305 - tripartite tricarboxylate transporter substrate binding protein, at 2,139,787 to 2,140,779 _RS10305 ABID97_RS10310: ABID97_RS10310 - lactonase family protein, at 2,140,817 to 2,141,881 _RS10310 Position (kb) 2139 2140 2141Strain fitness (log2 ratio) -2 -1 0 1 2at 2139.691 kb on + strandat 2139.691 kb on + strandat 2139.691 kb on + strandat 2139.691 kb on + strandat 2139.692 kb on - strandat 2139.717 kb on - strandat 2139.717 kb on - strandat 2139.717 kb on - strandat 2139.717 kb on - strandat 2140.670 kb on + strand, within ABID97_RS10305at 2140.670 kb on + strand, within ABID97_RS10305at 2140.671 kb on - strand, within ABID97_RS10305at 2140.784 kb on + strandat 2140.785 kb on + strandat 2140.785 kb on + strandat 2140.786 kb on - strandat 2141.208 kb on + strand, within ABID97_RS10310at 2141.209 kb on - strand, within ABID97_RS10310at 2141.244 kb on + strand, within ABID97_RS10310at 2141.244 kb on + strand, within ABID97_RS10310at 2141.673 kb on + strand, within ABID97_RS10310

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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2,139,691 + -0.5
2,139,691 + -0.3
2,139,691 + -0.2
2,139,691 + -0.1
2,139,692 - +1.5
2,139,717 - -0.3
2,139,717 - +0.1
2,139,717 - +0.1
2,139,717 - -0.1
2,140,670 + ABID97_RS10305 0.89 -1.5
2,140,670 + ABID97_RS10305 0.89 +1.3
2,140,671 - ABID97_RS10305 0.89 -2.0
2,140,784 + +2.0
2,140,785 + +0.1
2,140,785 + +0.1
2,140,786 - -0.9
2,141,208 + ABID97_RS10310 0.37 +0.3
2,141,209 - ABID97_RS10310 0.37 +0.6
2,141,244 + ABID97_RS10310 0.40 -0.9
2,141,244 + ABID97_RS10310 0.40 -0.5
2,141,673 + ABID97_RS10310 0.80 -0.1

Or see this region's nucleotide sequence