Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS10300 and ABID97_RS10305 are separated by 142 nucleotides ABID97_RS10305 and ABID97_RS10310 are separated by 37 nucleotides
ABID97_RS10300: ABID97_RS10300 - archaetidylserine decarboxylase, at 2,138,793 to 2,139,644
_RS10300
ABID97_RS10305: ABID97_RS10305 - tripartite tricarboxylate transporter substrate binding protein, at 2,139,787 to 2,140,779
_RS10305
ABID97_RS10310: ABID97_RS10310 - lactonase family protein, at 2,140,817 to 2,141,881
_RS10310
Position (kb)
2139
2140
2141 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2139.691 kb on + strand at 2139.691 kb on + strand at 2139.691 kb on + strand at 2139.691 kb on + strand at 2139.692 kb on - strand at 2139.717 kb on - strand at 2139.717 kb on - strand at 2139.717 kb on - strand at 2139.717 kb on - strand at 2140.670 kb on + strand, within ABID97_RS10305 at 2140.670 kb on + strand, within ABID97_RS10305 at 2140.671 kb on - strand, within ABID97_RS10305 at 2140.784 kb on + strand at 2140.785 kb on + strand at 2140.785 kb on + strand at 2140.786 kb on - strand at 2141.208 kb on + strand, within ABID97_RS10310 at 2141.209 kb on - strand, within ABID97_RS10310 at 2141.244 kb on + strand, within ABID97_RS10310 at 2141.244 kb on + strand, within ABID97_RS10310 at 2141.673 kb on + strand, within ABID97_RS10310
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 2,139,691 + -0.5 2,139,691 + -0.3 2,139,691 + -0.2 2,139,691 + -0.1 2,139,692 - +1.5 2,139,717 - -0.3 2,139,717 - +0.1 2,139,717 - +0.1 2,139,717 - -0.1 2,140,670 + ABID97_RS10305 0.89 -1.5 2,140,670 + ABID97_RS10305 0.89 +1.3 2,140,671 - ABID97_RS10305 0.89 -2.0 2,140,784 + +2.0 2,140,785 + +0.1 2,140,785 + +0.1 2,140,786 - -0.9 2,141,208 + ABID97_RS10310 0.37 +0.3 2,141,209 - ABID97_RS10310 0.37 +0.6 2,141,244 + ABID97_RS10310 0.40 -0.9 2,141,244 + ABID97_RS10310 0.40 -0.5 2,141,673 + ABID97_RS10310 0.80 -0.1
Or see this region's nucleotide sequence