Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09170 and ABID97_RS09175 are separated by 43 nucleotides ABID97_RS09175 and ABID97_RS09180 are separated by 97 nucleotides ABID97_RS09180 and ABID97_RS09185 are separated by 32 nucleotides
ABID97_RS09170: ABID97_RS09170 - homoserine kinase, at 1,927,789 to 1,928,835
_RS09170
ABID97_RS09175: ABID97_RS09175 - hypothetical protein, at 1,928,879 to 1,929,244
_RS09175
ABID97_RS09180: ABID97_RS09180 - DNA polymerase I, at 1,929,342 to 1,932,164
_RS09180
ABID97_RS09185: ABID97_RS09185 - M20/M25/M40 family metallo-hydrolase, at 1,932,197 to 1,933,483
_RS09185
Position (kb) 1929
1930
1931
1932
1933 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1929.030 kb on + strand, within ABID97_RS09175 at 1929.255 kb on + strand at 1929.255 kb on + strand at 1929.255 kb on + strand at 1929.256 kb on - strand at 1929.256 kb on - strand at 1930.372 kb on - strand, within ABID97_RS09180 at 1930.527 kb on + strand, within ABID97_RS09180 at 1930.528 kb on - strand, within ABID97_RS09180 at 1930.548 kb on + strand, within ABID97_RS09180 at 1930.722 kb on + strand, within ABID97_RS09180 at 1930.722 kb on + strand, within ABID97_RS09180 at 1930.722 kb on + strand, within ABID97_RS09180 at 1930.831 kb on + strand, within ABID97_RS09180 at 1931.352 kb on + strand, within ABID97_RS09180 at 1931.353 kb on - strand, within ABID97_RS09180 at 1931.494 kb on - strand, within ABID97_RS09180 at 1931.736 kb on + strand, within ABID97_RS09180 at 1931.778 kb on + strand, within ABID97_RS09180 at 1932.563 kb on + strand, within ABID97_RS09185 at 1932.563 kb on + strand, within ABID97_RS09185 at 1932.563 kb on + strand, within ABID97_RS09185
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 1,929,030 + ABID97_RS09175 0.41 +0.2 1,929,255 + -0.6 1,929,255 + -1.4 1,929,255 + +0.1 1,929,256 - -0.9 1,929,256 - +0.4 1,930,372 - ABID97_RS09180 0.36 -0.9 1,930,527 + ABID97_RS09180 0.42 -1.7 1,930,528 - ABID97_RS09180 0.42 -0.7 1,930,548 + ABID97_RS09180 0.43 -1.6 1,930,722 + ABID97_RS09180 0.49 -1.0 1,930,722 + ABID97_RS09180 0.49 -3.0 1,930,722 + ABID97_RS09180 0.49 -2.8 1,930,831 + ABID97_RS09180 0.53 -0.6 1,931,352 + ABID97_RS09180 0.71 -1.6 1,931,353 - ABID97_RS09180 0.71 -1.8 1,931,494 - ABID97_RS09180 0.76 -1.7 1,931,736 + ABID97_RS09180 0.85 -0.0 1,931,778 + ABID97_RS09180 0.86 -3.2 1,932,563 + ABID97_RS09185 0.28 -0.5 1,932,563 + ABID97_RS09185 0.28 +0.8 1,932,563 + ABID97_RS09185 0.28 -0.4
Or see this region's nucleotide sequence