Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09005 and ABID97_RS09010 are separated by 80 nucleotides ABID97_RS09010 and ABID97_RS09015 are separated by 97 nucleotides ABID97_RS09015 and ABID97_RS09020 are separated by 33 nucleotides
ABID97_RS09005: ABID97_RS09005 - TagK domain-containing protein, at 1,893,608 to 1,894,717
_RS09005
ABID97_RS09010: ABID97_RS09010 - type VI secretion system accessory protein TagJ, at 1,894,798 to 1,895,592
_RS09010
ABID97_RS09015: ABID97_RS09015 - type VI secretion system baseplate subunit TssE, at 1,895,690 to 1,896,187
_RS09015
ABID97_RS09020: ABID97_RS09020 - type VI secretion system baseplate subunit TssF, at 1,896,221 to 1,898,101
_RS09020
Position (kb) 1895
1896
1897 Strain fitness (log2 ratio) -1
0
1 at 1894.707 kb on + strand at 1895.401 kb on + strand, within ABID97_RS09010 at 1895.701 kb on - strand at 1895.757 kb on - strand, within ABID97_RS09015 at 1895.912 kb on + strand, within ABID97_RS09015 at 1896.104 kb on - strand, within ABID97_RS09015 at 1896.242 kb on + strand at 1896.245 kb on + strand at 1896.264 kb on - strand at 1896.358 kb on - strand at 1897.041 kb on - strand, within ABID97_RS09020
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 1,894,707 + -0.0 1,895,401 + ABID97_RS09010 0.76 +0.1 1,895,701 - -0.2 1,895,757 - ABID97_RS09015 0.13 -1.5 1,895,912 + ABID97_RS09015 0.45 -0.2 1,896,104 - ABID97_RS09015 0.83 -0.6 1,896,242 + +0.6 1,896,245 + -0.4 1,896,264 - -0.1 1,896,358 - +0.4 1,897,041 - ABID97_RS09020 0.44 +0.1
Or see this region's nucleotide sequence