Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08910

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08905 and ABID97_RS08910 are separated by 82 nucleotidesABID97_RS08910 and ABID97_RS08915 overlap by 11 nucleotides ABID97_RS08905: ABID97_RS08905 - branched-chain amino acid ABC transporter ATP-binding protein/permease, at 1,865,713 to 1,867,512 _RS08905 ABID97_RS08910: ABID97_RS08910 - ABC transporter ATP-binding protein, at 1,867,595 to 1,868,326 _RS08910 ABID97_RS08915: ABID97_RS08915 - ATP-dependent acyl-CoA ligase, at 1,868,316 to 1,869,917 _RS08915 Position (kb) 1867 1868 1869Strain fitness (log2 ratio) -1 0 1at 1866.704 kb on - strand, within ABID97_RS08905at 1867.508 kb on + strandat 1867.904 kb on + strand, within ABID97_RS08910at 1867.956 kb on - strand, within ABID97_RS08910at 1868.295 kb on - strandat 1868.653 kb on + strand, within ABID97_RS08915at 1868.853 kb on + strand, within ABID97_RS08915at 1868.853 kb on + strand, within ABID97_RS08915at 1868.853 kb on + strand, within ABID97_RS08915at 1868.854 kb on - strand, within ABID97_RS08915

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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1,866,704 - ABID97_RS08905 0.55 +0.7
1,867,508 + +0.4
1,867,904 + ABID97_RS08910 0.42 +0.3
1,867,956 - ABID97_RS08910 0.49 +0.5
1,868,295 - -0.4
1,868,653 + ABID97_RS08915 0.21 -0.0
1,868,853 + ABID97_RS08915 0.34 +1.0
1,868,853 + ABID97_RS08915 0.34 +0.0
1,868,853 + ABID97_RS08915 0.34 -0.7
1,868,854 - ABID97_RS08915 0.34 -0.3

Or see this region's nucleotide sequence