Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08655

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08650 and ABID97_RS08655 are separated by 132 nucleotidesABID97_RS08655 and ABID97_RS08660 overlap by 1 nucleotidesABID97_RS08660 and ABID97_RS08665 are separated by 129 nucleotides ABID97_RS08650: ABID97_RS08650 - murein biosynthesis integral membrane protein MurJ, at 1,816,061 to 1,817,614 _RS08650 ABID97_RS08655: ABID97_RS08655 - tetratricopeptide repeat protein, at 1,817,747 to 1,818,598 _RS08655 ABID97_RS08660: ABID97_RS08660 - VOC family protein, at 1,818,598 to 1,819,026 _RS08660 ABID97_RS08665: ABID97_RS08665 - YciI family protein, at 1,819,156 to 1,819,584 _RS08665 Position (kb) 1817 1818 1819Strain fitness (log2 ratio) -1 0 1at 1817.612 kb on + strandat 1817.858 kb on + strand, within ABID97_RS08655at 1818.017 kb on + strand, within ABID97_RS08655at 1818.017 kb on + strand, within ABID97_RS08655at 1818.020 kb on + strand, within ABID97_RS08655at 1818.020 kb on + strand, within ABID97_RS08655at 1818.020 kb on + strand, within ABID97_RS08655at 1818.038 kb on + strand, within ABID97_RS08655at 1818.255 kb on - strand, within ABID97_RS08655at 1818.305 kb on + strand, within ABID97_RS08655at 1818.305 kb on + strand, within ABID97_RS08655at 1818.306 kb on - strand, within ABID97_RS08655at 1818.518 kb on + strandat 1818.518 kb on + strandat 1818.518 kb on + strandat 1818.519 kb on - strandat 1818.764 kb on - strand, within ABID97_RS08660at 1818.809 kb on - strand, within ABID97_RS08660at 1818.908 kb on - strand, within ABID97_RS08660at 1818.908 kb on - strand, within ABID97_RS08660at 1819.015 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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1,817,612 + -0.4
1,817,858 + ABID97_RS08655 0.13 +0.3
1,818,017 + ABID97_RS08655 0.32 -0.1
1,818,017 + ABID97_RS08655 0.32 +0.1
1,818,020 + ABID97_RS08655 0.32 +1.2
1,818,020 + ABID97_RS08655 0.32 +0.2
1,818,020 + ABID97_RS08655 0.32 +0.8
1,818,038 + ABID97_RS08655 0.34 -0.3
1,818,255 - ABID97_RS08655 0.60 -0.1
1,818,305 + ABID97_RS08655 0.65 +0.3
1,818,305 + ABID97_RS08655 0.65 +1.3
1,818,306 - ABID97_RS08655 0.66 +0.2
1,818,518 + +0.0
1,818,518 + -0.1
1,818,518 + +0.5
1,818,519 - -0.4
1,818,764 - ABID97_RS08660 0.39 +0.5
1,818,809 - ABID97_RS08660 0.49 +0.3
1,818,908 - ABID97_RS08660 0.72 -0.5
1,818,908 - ABID97_RS08660 0.72 +0.3
1,819,015 + +0.2

Or see this region's nucleotide sequence