Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS08090 and ABID97_RS08095 overlap by 8 nucleotides ABID97_RS08095 and ABID97_RS08100 overlap by 4 nucleotides ABID97_RS08100 and ABID97_RS08105 overlap by 4 nucleotides ABID97_RS08105 and ABID97_RS08110 are separated by 31 nucleotides
ABID97_RS08090: ABID97_RS08090 - tRNA 2-selenouridine(34) synthase MnmH, at 1,696,960 to 1,698,033
_RS08090
ABID97_RS08095: ABID97_RS08095 - phosphonate ABC transporter, permease protein PhnE, at 1,698,026 to 1,698,829
_RS08095
ABID97_RS08100: ABID97_RS08100 - ABC transporter permease, at 1,698,826 to 1,699,668
_RS08100
ABID97_RS08105: ABID97_RS08105 - ATP-binding cassette domain-containing protein, at 1,699,665 to 1,700,507
_RS08105
ABID97_RS08110: ABID97_RS08110 - putative selenate ABC transporter substrate-binding protein, at 1,700,539 to 1,701,396
_RS08110
Position (kb) 1698
1699
1700 Strain fitness (log2 ratio) -1
0
1 at 1697.861 kb on + strand, within ABID97_RS08090 at 1697.862 kb on - strand, within ABID97_RS08090 at 1697.862 kb on - strand, within ABID97_RS08090 at 1697.862 kb on - strand, within ABID97_RS08090 at 1698.153 kb on + strand, within ABID97_RS08095 at 1698.153 kb on + strand, within ABID97_RS08095 at 1698.229 kb on - strand, within ABID97_RS08095 at 1698.237 kb on + strand, within ABID97_RS08095 at 1698.238 kb on - strand, within ABID97_RS08095 at 1699.025 kb on + strand, within ABID97_RS08100 at 1699.065 kb on - strand, within ABID97_RS08100 at 1699.781 kb on - strand, within ABID97_RS08105 at 1700.023 kb on + strand, within ABID97_RS08105 at 1700.024 kb on - strand, within ABID97_RS08105 at 1700.586 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 1,697,861 + ABID97_RS08090 0.84 +0.5 1,697,862 - ABID97_RS08090 0.84 -0.1 1,697,862 - ABID97_RS08090 0.84 -0.4 1,697,862 - ABID97_RS08090 0.84 +0.1 1,698,153 + ABID97_RS08095 0.16 +0.5 1,698,153 + ABID97_RS08095 0.16 -0.2 1,698,229 - ABID97_RS08095 0.25 -0.6 1,698,237 + ABID97_RS08095 0.26 -0.9 1,698,238 - ABID97_RS08095 0.26 +0.1 1,699,025 + ABID97_RS08100 0.24 +1.2 1,699,065 - ABID97_RS08100 0.28 -0.0 1,699,781 - ABID97_RS08105 0.14 -0.6 1,700,023 + ABID97_RS08105 0.42 -0.3 1,700,024 - ABID97_RS08105 0.43 -0.2 1,700,586 - +1.0
Or see this region's nucleotide sequence