Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07950

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07940 and ABID97_RS07945 are separated by 5 nucleotidesABID97_RS07945 and ABID97_RS07950 are separated by 105 nucleotidesABID97_RS07950 and ABID97_RS07955 are separated by 51 nucleotides ABID97_RS07940: ABID97_RS07940 - acyl-CoA dehydrogenase family protein, at 1,667,833 to 1,668,996 _RS07940 ABID97_RS07945: ABID97_RS07945 - citryl-CoA lyase, at 1,669,002 to 1,669,787 _RS07945 ABID97_RS07950: ABID97_RS07950 - acyl-CoA dehydrogenase, at 1,669,893 to 1,672,220 _RS07950 ABID97_RS07955: ABID97_RS07955 - tripartite tricarboxylate transporter substrate binding protein, at 1,672,272 to 1,673,267 _RS07955 Position (kb) 1669 1670 1671 1672 1673Strain fitness (log2 ratio) -1 0 1at 1669.256 kb on - strand, within ABID97_RS07945at 1669.441 kb on + strand, within ABID97_RS07945at 1669.441 kb on + strand, within ABID97_RS07945at 1669.543 kb on + strand, within ABID97_RS07945at 1669.544 kb on - strand, within ABID97_RS07945at 1669.781 kb on + strandat 1669.798 kb on + strandat 1670.928 kb on + strand, within ABID97_RS07950at 1670.928 kb on + strand, within ABID97_RS07950at 1670.932 kb on - strand, within ABID97_RS07950at 1671.148 kb on - strand, within ABID97_RS07950at 1671.190 kb on - strand, within ABID97_RS07950at 1672.026 kb on + strandat 1672.027 kb on - strandat 1672.027 kb on - strandat 1672.155 kb on + strandat 1672.174 kb on + strandat 1672.410 kb on + strand, within ABID97_RS07955at 1672.734 kb on + strand, within ABID97_RS07955at 1672.735 kb on - strand, within ABID97_RS07955at 1672.764 kb on + strand, within ABID97_RS07955at 1672.764 kb on + strand, within ABID97_RS07955at 1672.764 kb on + strand, within ABID97_RS07955at 1672.765 kb on - strand, within ABID97_RS07955at 1672.852 kb on - strand, within ABID97_RS07955at 1673.038 kb on - strand, within ABID97_RS07955at 1673.065 kb on - strand, within ABID97_RS07955at 1673.170 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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1,669,256 - ABID97_RS07945 0.32 -0.6
1,669,441 + ABID97_RS07945 0.56 -0.1
1,669,441 + ABID97_RS07945 0.56 +0.0
1,669,543 + ABID97_RS07945 0.69 -0.4
1,669,544 - ABID97_RS07945 0.69 +0.6
1,669,781 + +0.6
1,669,798 + +0.2
1,670,928 + ABID97_RS07950 0.44 -0.0
1,670,928 + ABID97_RS07950 0.44 -0.3
1,670,932 - ABID97_RS07950 0.45 -0.1
1,671,148 - ABID97_RS07950 0.54 -0.4
1,671,190 - ABID97_RS07950 0.56 -0.1
1,672,026 + -0.1
1,672,027 - -0.2
1,672,027 - -0.0
1,672,155 + -0.6
1,672,174 + +0.1
1,672,410 + ABID97_RS07955 0.14 +0.1
1,672,734 + ABID97_RS07955 0.46 -0.2
1,672,735 - ABID97_RS07955 0.46 -0.1
1,672,764 + ABID97_RS07955 0.49 -0.8
1,672,764 + ABID97_RS07955 0.49 -0.0
1,672,764 + ABID97_RS07955 0.49 -0.2
1,672,765 - ABID97_RS07955 0.49 +0.7
1,672,852 - ABID97_RS07955 0.58 +0.2
1,673,038 - ABID97_RS07955 0.77 +0.6
1,673,065 - ABID97_RS07955 0.80 +0.0
1,673,170 - +0.1

Or see this region's nucleotide sequence