Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS07940 and ABID97_RS07945 are separated by 5 nucleotides ABID97_RS07945 and ABID97_RS07950 are separated by 105 nucleotides ABID97_RS07950 and ABID97_RS07955 are separated by 51 nucleotides
ABID97_RS07940: ABID97_RS07940 - acyl-CoA dehydrogenase family protein, at 1,667,833 to 1,668,996
_RS07940
ABID97_RS07945: ABID97_RS07945 - citryl-CoA lyase, at 1,669,002 to 1,669,787
_RS07945
ABID97_RS07950: ABID97_RS07950 - acyl-CoA dehydrogenase, at 1,669,893 to 1,672,220
_RS07950
ABID97_RS07955: ABID97_RS07955 - tripartite tricarboxylate transporter substrate binding protein, at 1,672,272 to 1,673,267
_RS07955
Position (kb)
1669
1670
1671
1672
1673 Strain fitness (log2 ratio)
-1
0
1 at 1669.256 kb on - strand, within ABID97_RS07945 at 1669.441 kb on + strand, within ABID97_RS07945 at 1669.441 kb on + strand, within ABID97_RS07945 at 1669.543 kb on + strand, within ABID97_RS07945 at 1669.544 kb on - strand, within ABID97_RS07945 at 1669.781 kb on + strand at 1669.798 kb on + strand at 1670.928 kb on + strand, within ABID97_RS07950 at 1670.928 kb on + strand, within ABID97_RS07950 at 1670.932 kb on - strand, within ABID97_RS07950 at 1671.148 kb on - strand, within ABID97_RS07950 at 1671.190 kb on - strand, within ABID97_RS07950 at 1672.026 kb on + strand at 1672.027 kb on - strand at 1672.027 kb on - strand at 1672.155 kb on + strand at 1672.174 kb on + strand at 1672.410 kb on + strand, within ABID97_RS07955 at 1672.734 kb on + strand, within ABID97_RS07955 at 1672.735 kb on - strand, within ABID97_RS07955 at 1672.764 kb on + strand, within ABID97_RS07955 at 1672.764 kb on + strand, within ABID97_RS07955 at 1672.764 kb on + strand, within ABID97_RS07955 at 1672.765 kb on - strand, within ABID97_RS07955 at 1672.852 kb on - strand, within ABID97_RS07955 at 1673.038 kb on - strand, within ABID97_RS07955 at 1673.065 kb on - strand, within ABID97_RS07955 at 1673.170 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 1,669,256 - ABID97_RS07945 0.32 -0.6 1,669,441 + ABID97_RS07945 0.56 -0.1 1,669,441 + ABID97_RS07945 0.56 +0.0 1,669,543 + ABID97_RS07945 0.69 -0.4 1,669,544 - ABID97_RS07945 0.69 +0.6 1,669,781 + +0.6 1,669,798 + +0.2 1,670,928 + ABID97_RS07950 0.44 -0.0 1,670,928 + ABID97_RS07950 0.44 -0.3 1,670,932 - ABID97_RS07950 0.45 -0.1 1,671,148 - ABID97_RS07950 0.54 -0.4 1,671,190 - ABID97_RS07950 0.56 -0.1 1,672,026 + -0.1 1,672,027 - -0.2 1,672,027 - -0.0 1,672,155 + -0.6 1,672,174 + +0.1 1,672,410 + ABID97_RS07955 0.14 +0.1 1,672,734 + ABID97_RS07955 0.46 -0.2 1,672,735 - ABID97_RS07955 0.46 -0.1 1,672,764 + ABID97_RS07955 0.49 -0.8 1,672,764 + ABID97_RS07955 0.49 -0.0 1,672,764 + ABID97_RS07955 0.49 -0.2 1,672,765 - ABID97_RS07955 0.49 +0.7 1,672,852 - ABID97_RS07955 0.58 +0.2 1,673,038 - ABID97_RS07955 0.77 +0.6 1,673,065 - ABID97_RS07955 0.80 +0.0 1,673,170 - +0.1
Or see this region's nucleotide sequence