Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07500

Experiment: Glucuronamide (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS07495 and ABID97_RS07500 are separated by 146 nucleotidesABID97_RS07500 and ABID97_RS07505 are separated by 15 nucleotides ABID97_RS07495: ABID97_RS07495 - patatin-like phospholipase family protein, at 1,581,919 to 1,583,112 _RS07495 ABID97_RS07500: ABID97_RS07500 - iron-sulfur cluster carrier protein ApbC, at 1,583,259 to 1,584,350 _RS07500 ABID97_RS07505: ABID97_RS07505 - LysR substrate-binding domain-containing protein, at 1,584,366 to 1,585,310 _RS07505 Position (kb) 1583 1584 1585Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1582.328 kb on + strand, within ABID97_RS07495at 1582.329 kb on - strand, within ABID97_RS07495at 1582.329 kb on - strand, within ABID97_RS07495at 1582.457 kb on + strand, within ABID97_RS07495at 1582.457 kb on + strand, within ABID97_RS07495at 1582.458 kb on - strand, within ABID97_RS07495at 1582.464 kb on + strand, within ABID97_RS07495at 1582.465 kb on - strand, within ABID97_RS07495at 1582.465 kb on - strand, within ABID97_RS07495at 1582.631 kb on + strand, within ABID97_RS07495at 1582.632 kb on - strand, within ABID97_RS07495at 1582.632 kb on - strand, within ABID97_RS07495at 1582.632 kb on - strand, within ABID97_RS07495at 1582.850 kb on + strand, within ABID97_RS07495at 1583.670 kb on + strand, within ABID97_RS07500at 1583.670 kb on + strand, within ABID97_RS07500at 1583.670 kb on + strand, within ABID97_RS07500at 1583.880 kb on + strand, within ABID97_RS07500at 1583.881 kb on - strand, within ABID97_RS07500at 1584.153 kb on + strand, within ABID97_RS07500at 1584.153 kb on + strand, within ABID97_RS07500at 1584.252 kb on + strandat 1584.252 kb on + strandat 1584.529 kb on - strand, within ABID97_RS07505at 1584.867 kb on + strand, within ABID97_RS07505at 1584.867 kb on + strand, within ABID97_RS07505at 1584.867 kb on + strand, within ABID97_RS07505at 1584.868 kb on - strand, within ABID97_RS07505at 1584.868 kb on - strand, within ABID97_RS07505at 1585.061 kb on + strand, within ABID97_RS07505at 1585.061 kb on + strand, within ABID97_RS07505at 1585.061 kb on + strand, within ABID97_RS07505at 1585.062 kb on - strand, within ABID97_RS07505at 1585.062 kb on - strand, within ABID97_RS07505at 1585.062 kb on - strand, within ABID97_RS07505at 1585.062 kb on - strand, within ABID97_RS07505at 1585.138 kb on - strand, within ABID97_RS07505at 1585.309 kb on - strandat 1585.343 kb on + strandat 1585.344 kb on - strandat 1585.347 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
remove
1,582,328 + ABID97_RS07495 0.34 -0.3
1,582,329 - ABID97_RS07495 0.34 -0.5
1,582,329 - ABID97_RS07495 0.34 +0.1
1,582,457 + ABID97_RS07495 0.45 -1.3
1,582,457 + ABID97_RS07495 0.45 -0.3
1,582,458 - ABID97_RS07495 0.45 -0.0
1,582,464 + ABID97_RS07495 0.46 -0.7
1,582,465 - ABID97_RS07495 0.46 -0.2
1,582,465 - ABID97_RS07495 0.46 -0.5
1,582,631 + ABID97_RS07495 0.60 +0.1
1,582,632 - ABID97_RS07495 0.60 +0.2
1,582,632 - ABID97_RS07495 0.60 -0.2
1,582,632 - ABID97_RS07495 0.60 +0.0
1,582,850 + ABID97_RS07495 0.78 -0.4
1,583,670 + ABID97_RS07500 0.38 +2.0
1,583,670 + ABID97_RS07500 0.38 +1.4
1,583,670 + ABID97_RS07500 0.38 +1.9
1,583,880 + ABID97_RS07500 0.57 +2.9
1,583,881 - ABID97_RS07500 0.57 +2.4
1,584,153 + ABID97_RS07500 0.82 +1.5
1,584,153 + ABID97_RS07500 0.82 -0.0
1,584,252 + +0.8
1,584,252 + +1.7
1,584,529 - ABID97_RS07505 0.17 -0.5
1,584,867 + ABID97_RS07505 0.53 -0.8
1,584,867 + ABID97_RS07505 0.53 +0.0
1,584,867 + ABID97_RS07505 0.53 -0.5
1,584,868 - ABID97_RS07505 0.53 +0.4
1,584,868 - ABID97_RS07505 0.53 -0.5
1,585,061 + ABID97_RS07505 0.74 +0.0
1,585,061 + ABID97_RS07505 0.74 -2.0
1,585,061 + ABID97_RS07505 0.74 -0.9
1,585,062 - ABID97_RS07505 0.74 -0.2
1,585,062 - ABID97_RS07505 0.74 +0.2
1,585,062 - ABID97_RS07505 0.74 +0.5
1,585,062 - ABID97_RS07505 0.74 +0.1
1,585,138 - ABID97_RS07505 0.82 +1.5
1,585,309 - -0.4
1,585,343 + +1.1
1,585,344 - +0.4
1,585,347 + +0.1

Or see this region's nucleotide sequence