Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS06965 and ABID97_RS06970 are separated by 135 nucleotides ABID97_RS06970 and ABID97_RS06975 overlap by 4 nucleotides ABID97_RS06975 and ABID97_RS06980 overlap by 1 nucleotides
ABID97_RS06965: ABID97_RS06965 - type II secretion system protein GspL, at 1,475,629 to 1,476,840
_RS06965
ABID97_RS06970: ABID97_RS06970 - type II secretion system minor pseudopilin GspK, at 1,476,976 to 1,477,998
_RS06970
ABID97_RS06975: ABID97_RS06975 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,477,995 to 1,478,678
_RS06975
ABID97_RS06980: ABID97_RS06980 - type II secretion system minor pseudopilin GspI, at 1,478,678 to 1,479,052
_RS06980
Position (kb) 1476
1477
1478 Strain fitness (log2 ratio) -1
0
1 at 1476.077 kb on + strand, within ABID97_RS06965 at 1476.077 kb on + strand, within ABID97_RS06965 at 1476.077 kb on + strand, within ABID97_RS06965 at 1476.785 kb on + strand at 1476.786 kb on - strand at 1476.868 kb on - strand at 1476.984 kb on + strand at 1477.337 kb on + strand, within ABID97_RS06970 at 1477.337 kb on + strand, within ABID97_RS06970 at 1478.121 kb on - strand, within ABID97_RS06975 at 1478.121 kb on - strand, within ABID97_RS06975 at 1478.198 kb on - strand, within ABID97_RS06975 at 1478.198 kb on - strand, within ABID97_RS06975
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 1,476,077 + ABID97_RS06965 0.37 -0.2 1,476,077 + ABID97_RS06965 0.37 -0.4 1,476,077 + ABID97_RS06965 0.37 -0.0 1,476,785 + +0.8 1,476,786 - -0.0 1,476,868 - -0.3 1,476,984 + +1.0 1,477,337 + ABID97_RS06970 0.35 -0.6 1,477,337 + ABID97_RS06970 0.35 -1.4 1,478,121 - ABID97_RS06975 0.18 +1.2 1,478,121 - ABID97_RS06975 0.18 -0.1 1,478,198 - ABID97_RS06975 0.30 -0.9 1,478,198 - ABID97_RS06975 0.30 -0.2
Or see this region's nucleotide sequence