Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06765

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS06755 and ABID97_RS06760 are separated by 125 nucleotidesABID97_RS06760 and ABID97_RS06765 are separated by 1 nucleotidesABID97_RS06765 and ABID97_RS06770 are separated by 82 nucleotides ABID97_RS06755: ABID97_RS06755 - putative Na+/H+ antiporter, at 1,424,563 to 1,425,822 _RS06755 ABID97_RS06760: ABID97_RS06760 - XRE family transcriptional regulator, at 1,425,948 to 1,426,535 _RS06760 ABID97_RS06765: ABID97_RS06765 - GNAT family N-acetyltransferase, at 1,426,537 to 1,427,076 _RS06765 ABID97_RS06770: ABID97_RS06770 - CapA family protein, at 1,427,159 to 1,430,422 _RS06770 Position (kb) 1426 1427 1428Strain fitness (log2 ratio) -1 0 1 2at 1425.598 kb on + strand, within ABID97_RS06755at 1425.599 kb on - strand, within ABID97_RS06755at 1425.640 kb on + strand, within ABID97_RS06755at 1425.640 kb on + strand, within ABID97_RS06755at 1425.640 kb on + strand, within ABID97_RS06755at 1425.641 kb on - strand, within ABID97_RS06755at 1425.641 kb on - strand, within ABID97_RS06755at 1425.641 kb on - strand, within ABID97_RS06755at 1425.641 kb on - strand, within ABID97_RS06755at 1425.641 kb on - strand, within ABID97_RS06755at 1425.641 kb on - strand, within ABID97_RS06755at 1425.934 kb on - strandat 1426.323 kb on + strand, within ABID97_RS06760at 1426.323 kb on + strand, within ABID97_RS06760at 1426.464 kb on + strand, within ABID97_RS06760at 1426.464 kb on + strand, within ABID97_RS06760at 1426.465 kb on - strand, within ABID97_RS06760at 1426.465 kb on - strand, within ABID97_RS06760at 1426.465 kb on - strand, within ABID97_RS06760at 1426.467 kb on + strand, within ABID97_RS06760at 1426.467 kb on + strand, within ABID97_RS06760at 1426.468 kb on - strand, within ABID97_RS06760at 1426.468 kb on - strand, within ABID97_RS06760at 1426.468 kb on - strand, within ABID97_RS06760at 1426.468 kb on - strand, within ABID97_RS06760at 1426.468 kb on - strand, within ABID97_RS06760at 1426.468 kb on - strand, within ABID97_RS06760at 1426.495 kb on - strandat 1426.495 kb on - strandat 1426.972 kb on + strand, within ABID97_RS06765at 1426.973 kb on - strand, within ABID97_RS06765at 1427.053 kb on + strandat 1427.053 kb on + strandat 1427.053 kb on + strandat 1427.053 kb on + strandat 1427.053 kb on + strandat 1427.054 kb on - strandat 1427.054 kb on - strandat 1427.480 kb on + strandat 1427.481 kb on - strandat 1427.481 kb on - strandat 1427.481 kb on - strandat 1427.481 kb on - strandat 1427.481 kb on - strandat 1427.481 kb on - strandat 1427.561 kb on + strand, within ABID97_RS06770at 1427.561 kb on + strand, within ABID97_RS06770at 1427.561 kb on + strand, within ABID97_RS06770at 1427.562 kb on - strand, within ABID97_RS06770at 1427.696 kb on + strand, within ABID97_RS06770at 1427.696 kb on + strand, within ABID97_RS06770at 1427.814 kb on - strand, within ABID97_RS06770at 1427.814 kb on - strand, within ABID97_RS06770at 1427.891 kb on + strand, within ABID97_RS06770at 1427.891 kb on + strand, within ABID97_RS06770at 1427.891 kb on + strand, within ABID97_RS06770at 1427.892 kb on - strand, within ABID97_RS06770at 1427.892 kb on - strand, within ABID97_RS06770at 1427.921 kb on + strand, within ABID97_RS06770at 1427.921 kb on + strand, within ABID97_RS06770at 1427.921 kb on + strand, within ABID97_RS06770at 1428.050 kb on + strand, within ABID97_RS06770

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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1,425,598 + ABID97_RS06755 0.82 -0.4
1,425,599 - ABID97_RS06755 0.82 -0.2
1,425,640 + ABID97_RS06755 0.85 -0.1
1,425,640 + ABID97_RS06755 0.85 -0.3
1,425,640 + ABID97_RS06755 0.85 +0.5
1,425,641 - ABID97_RS06755 0.86 +0.2
1,425,641 - ABID97_RS06755 0.86 +0.1
1,425,641 - ABID97_RS06755 0.86 +0.2
1,425,641 - ABID97_RS06755 0.86 +0.4
1,425,641 - ABID97_RS06755 0.86 -0.2
1,425,641 - ABID97_RS06755 0.86 -0.2
1,425,934 - +0.4
1,426,323 + ABID97_RS06760 0.64 +1.2
1,426,323 + ABID97_RS06760 0.64 +2.5
1,426,464 + ABID97_RS06760 0.88 +0.0
1,426,464 + ABID97_RS06760 0.88 -0.5
1,426,465 - ABID97_RS06760 0.88 -0.4
1,426,465 - ABID97_RS06760 0.88 -0.5
1,426,465 - ABID97_RS06760 0.88 -0.0
1,426,467 + ABID97_RS06760 0.88 +0.4
1,426,467 + ABID97_RS06760 0.88 +0.1
1,426,468 - ABID97_RS06760 0.88 -0.1
1,426,468 - ABID97_RS06760 0.88 -0.1
1,426,468 - ABID97_RS06760 0.88 +0.4
1,426,468 - ABID97_RS06760 0.88 +0.1
1,426,468 - ABID97_RS06760 0.88 +1.5
1,426,468 - ABID97_RS06760 0.88 +1.0
1,426,495 - +1.8
1,426,495 - +0.1
1,426,972 + ABID97_RS06765 0.81 -0.8
1,426,973 - ABID97_RS06765 0.81 -1.3
1,427,053 + -0.9
1,427,053 + +0.4
1,427,053 + +0.5
1,427,053 + +1.4
1,427,053 + -0.1
1,427,054 - -0.3
1,427,054 - -0.5
1,427,480 + -0.2
1,427,481 - -0.2
1,427,481 - -0.2
1,427,481 - +0.4
1,427,481 - +0.1
1,427,481 - -0.1
1,427,481 - +0.2
1,427,561 + ABID97_RS06770 0.12 -0.4
1,427,561 + ABID97_RS06770 0.12 +0.2
1,427,561 + ABID97_RS06770 0.12 -0.0
1,427,562 - ABID97_RS06770 0.12 -0.1
1,427,696 + ABID97_RS06770 0.16 +0.4
1,427,696 + ABID97_RS06770 0.16 +0.3
1,427,814 - ABID97_RS06770 0.20 -0.1
1,427,814 - ABID97_RS06770 0.20 +1.1
1,427,891 + ABID97_RS06770 0.22 +2.0
1,427,891 + ABID97_RS06770 0.22 +0.4
1,427,891 + ABID97_RS06770 0.22 -0.0
1,427,892 - ABID97_RS06770 0.22 -0.2
1,427,892 - ABID97_RS06770 0.22 +0.1
1,427,921 + ABID97_RS06770 0.23 +1.2
1,427,921 + ABID97_RS06770 0.23 +0.6
1,427,921 + ABID97_RS06770 0.23 -0.0
1,428,050 + ABID97_RS06770 0.27 -0.1

Or see this region's nucleotide sequence