Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05765

Experiment: Glucuronamide (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS05755 and ABID97_RS05760 are separated by 58 nucleotidesABID97_RS05760 and ABID97_RS05765 are separated by 24 nucleotidesABID97_RS05765 and ABID97_RS05770 are separated by 124 nucleotidesABID97_RS05770 and ABID97_RS05775 are separated by 132 nucleotides ABID97_RS05755: ABID97_RS05755 - glycosyltransferase, at 1,217,039 to 1,218,137 _RS05755 ABID97_RS05760: ABID97_RS05760 - acetylglutamate kinase, at 1,218,196 to 1,219,089 _RS05760 ABID97_RS05765: ABID97_RS05765 - UDP-glucose 4-epimerase GalE, at 1,219,114 to 1,220,133 _RS05765 ABID97_RS05770: ABID97_RS05770 - nucleoid occlusion factor SlmA, at 1,220,258 to 1,220,911 _RS05770 ABID97_RS05775: ABID97_RS05775 - catalase, at 1,221,044 to 1,222,567 _RS05775 Position (kb) 1219 1220 1221Strain fitness (log2 ratio) -1 0 1 2at 1219.271 kb on + strand, within ABID97_RS05765at 1219.271 kb on + strand, within ABID97_RS05765at 1219.430 kb on + strand, within ABID97_RS05765at 1219.430 kb on + strand, within ABID97_RS05765at 1219.431 kb on - strand, within ABID97_RS05765at 1219.599 kb on - strand, within ABID97_RS05765at 1219.743 kb on - strand, within ABID97_RS05765at 1219.835 kb on + strand, within ABID97_RS05765at 1219.835 kb on + strand, within ABID97_RS05765at 1219.838 kb on + strand, within ABID97_RS05765at 1219.838 kb on + strand, within ABID97_RS05765at 1219.838 kb on + strand, within ABID97_RS05765at 1219.839 kb on - strand, within ABID97_RS05765at 1219.839 kb on - strand, within ABID97_RS05765at 1219.839 kb on - strand, within ABID97_RS05765at 1219.839 kb on - strand, within ABID97_RS05765at 1219.839 kb on - strand, within ABID97_RS05765at 1220.170 kb on + strandat 1220.170 kb on + strandat 1220.170 kb on + strandat 1220.171 kb on - strandat 1220.237 kb on + strandat 1220.238 kb on - strandat 1220.238 kb on - strandat 1220.289 kb on + strandat 1220.465 kb on + strand, within ABID97_RS05770at 1220.466 kb on - strand, within ABID97_RS05770at 1220.910 kb on - strandat 1220.910 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
remove
1,219,271 + ABID97_RS05765 0.15 +0.4
1,219,271 + ABID97_RS05765 0.15 -0.1
1,219,430 + ABID97_RS05765 0.31 -0.9
1,219,430 + ABID97_RS05765 0.31 +1.2
1,219,431 - ABID97_RS05765 0.31 +0.0
1,219,599 - ABID97_RS05765 0.48 -0.8
1,219,743 - ABID97_RS05765 0.62 -1.7
1,219,835 + ABID97_RS05765 0.71 +2.1
1,219,835 + ABID97_RS05765 0.71 +0.6
1,219,838 + ABID97_RS05765 0.71 +0.0
1,219,838 + ABID97_RS05765 0.71 +0.2
1,219,838 + ABID97_RS05765 0.71 +0.9
1,219,839 - ABID97_RS05765 0.71 -0.2
1,219,839 - ABID97_RS05765 0.71 -1.5
1,219,839 - ABID97_RS05765 0.71 +1.4
1,219,839 - ABID97_RS05765 0.71 -0.4
1,219,839 - ABID97_RS05765 0.71 +0.3
1,220,170 + +0.0
1,220,170 + -0.8
1,220,170 + +0.9
1,220,171 - +0.1
1,220,237 + +0.0
1,220,238 - -0.4
1,220,238 - -0.1
1,220,289 + +0.0
1,220,465 + ABID97_RS05770 0.32 -0.7
1,220,466 - ABID97_RS05770 0.32 -0.8
1,220,910 - -0.4
1,220,910 - +0.3

Or see this region's nucleotide sequence