Strain Fitness in Variovorax sp. OAS795 around ABID97_RS04900

Experiment: Glucuronamide (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS04895 and ABID97_RS04900 are separated by 122 nucleotidesABID97_RS04900 and ABID97_RS04905 are separated by 71 nucleotidesABID97_RS04905 and ABID97_RS04910 are separated by 6 nucleotides ABID97_RS04895: ABID97_RS04895 - site-specific recombinase, at 1,017,783 to 1,019,759 _RS04895 ABID97_RS04900: ABID97_RS04900 - Co2+/Mg2+ efflux protein ApaG, at 1,019,882 to 1,020,277 _RS04900 ABID97_RS04905: ABID97_RS04905 - ribulose-phosphate 3-epimerase, at 1,020,349 to 1,021,041 _RS04905 ABID97_RS04910: ABID97_RS04910 - hypothetical protein, at 1,021,048 to 1,021,320 _RS04910 Position (kb) 1019 1020 1021Strain fitness (log2 ratio) -2 -1 0 1at 1019.024 kb on - strand, within ABID97_RS04895at 1019.245 kb on + strand, within ABID97_RS04895at 1019.246 kb on - strand, within ABID97_RS04895at 1019.246 kb on - strand, within ABID97_RS04895at 1019.246 kb on - strand, within ABID97_RS04895at 1019.504 kb on - strand, within ABID97_RS04895at 1019.759 kb on + strandat 1019.769 kb on + strandat 1019.769 kb on + strandat 1019.770 kb on - strandat 1019.770 kb on - strandat 1019.770 kb on - strandat 1019.770 kb on - strandat 1019.770 kb on - strandat 1019.985 kb on + strand, within ABID97_RS04900at 1019.985 kb on + strand, within ABID97_RS04900at 1019.985 kb on + strand, within ABID97_RS04900at 1019.985 kb on + strand, within ABID97_RS04900at 1019.985 kb on + strand, within ABID97_RS04900at 1019.986 kb on - strand, within ABID97_RS04900at 1019.986 kb on - strand, within ABID97_RS04900at 1019.986 kb on - strand, within ABID97_RS04900at 1019.986 kb on - strand, within ABID97_RS04900at 1019.986 kb on - strand, within ABID97_RS04900at 1020.190 kb on - strand, within ABID97_RS04900at 1020.190 kb on - strand, within ABID97_RS04900at 1020.201 kb on + strand, within ABID97_RS04900at 1020.201 kb on + strand, within ABID97_RS04900at 1020.201 kb on + strand, within ABID97_RS04900at 1020.201 kb on + strand, within ABID97_RS04900at 1020.201 kb on + strand, within ABID97_RS04900at 1020.201 kb on + strand, within ABID97_RS04900at 1020.202 kb on - strand, within ABID97_RS04900at 1020.202 kb on - strand, within ABID97_RS04900at 1020.202 kb on - strand, within ABID97_RS04900at 1020.238 kb on - strandat 1020.248 kb on + strandat 1020.248 kb on + strandat 1020.248 kb on + strandat 1020.249 kb on - strandat 1020.249 kb on - strandat 1020.290 kb on - strandat 1020.290 kb on - strandat 1020.475 kb on + strand, within ABID97_RS04905at 1020.476 kb on - strand, within ABID97_RS04905at 1020.714 kb on - strand, within ABID97_RS04905at 1021.039 kb on + strandat 1021.070 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
remove
1,019,024 - ABID97_RS04895 0.63 +0.1
1,019,245 + ABID97_RS04895 0.74 -0.4
1,019,246 - ABID97_RS04895 0.74 +0.8
1,019,246 - ABID97_RS04895 0.74 +0.4
1,019,246 - ABID97_RS04895 0.74 -0.3
1,019,504 - ABID97_RS04895 0.87 -0.0
1,019,759 + -0.1
1,019,769 + -1.7
1,019,769 + -0.4
1,019,770 - -0.2
1,019,770 - -0.4
1,019,770 - -0.5
1,019,770 - +1.7
1,019,770 - -0.3
1,019,985 + ABID97_RS04900 0.26 +0.5
1,019,985 + ABID97_RS04900 0.26 -1.1
1,019,985 + ABID97_RS04900 0.26 -0.5
1,019,985 + ABID97_RS04900 0.26 -0.2
1,019,985 + ABID97_RS04900 0.26 -0.6
1,019,986 - ABID97_RS04900 0.26 +0.1
1,019,986 - ABID97_RS04900 0.26 -0.2
1,019,986 - ABID97_RS04900 0.26 +0.5
1,019,986 - ABID97_RS04900 0.26 +0.2
1,019,986 - ABID97_RS04900 0.26 -0.5
1,020,190 - ABID97_RS04900 0.78 +0.1
1,020,190 - ABID97_RS04900 0.78 +1.6
1,020,201 + ABID97_RS04900 0.81 -0.2
1,020,201 + ABID97_RS04900 0.81 -0.2
1,020,201 + ABID97_RS04900 0.81 -0.1
1,020,201 + ABID97_RS04900 0.81 -0.1
1,020,201 + ABID97_RS04900 0.81 +0.1
1,020,201 + ABID97_RS04900 0.81 +0.5
1,020,202 - ABID97_RS04900 0.81 -0.0
1,020,202 - ABID97_RS04900 0.81 -1.1
1,020,202 - ABID97_RS04900 0.81 -0.8
1,020,238 - -0.4
1,020,248 + +0.7
1,020,248 + -2.1
1,020,248 + -0.1
1,020,249 - +0.1
1,020,249 - -0.5
1,020,290 - +0.3
1,020,290 - +0.4
1,020,475 + ABID97_RS04905 0.18 +1.1
1,020,476 - ABID97_RS04905 0.18 -0.1
1,020,714 - ABID97_RS04905 0.53 +0.2
1,021,039 + -0.0
1,021,070 + +0.1

Or see this region's nucleotide sequence