Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04675 and ABID97_RS04680 are separated by 130 nucleotides ABID97_RS04680 and ABID97_RS04685 are separated by 84 nucleotides ABID97_RS04685 and ABID97_RS04690 are separated by 41 nucleotides
ABID97_RS04675: ABID97_RS04675 - acetyl-CoA C-acetyltransferase, at 974,818 to 975,996
_RS04675
ABID97_RS04680: ABID97_RS04680 - DUF2917 domain-containing protein, at 976,127 to 976,450
_RS04680
ABID97_RS04685: ABID97_RS04685 - LysR substrate-binding domain-containing protein, at 976,535 to 977,470
_RS04685
ABID97_RS04690: ABID97_RS04690 - fasciclin domain-containing protein, at 977,512 to 978,024
_RS04690
Position (kb) 976
977
978 Strain fitness (log2 ratio) -2
-1
0
1 at 975.581 kb on + strand, within ABID97_RS04675 at 975.581 kb on + strand, within ABID97_RS04675 at 975.581 kb on + strand, within ABID97_RS04675 at 975.581 kb on + strand, within ABID97_RS04675 at 975.582 kb on - strand, within ABID97_RS04675 at 975.582 kb on - strand, within ABID97_RS04675 at 975.582 kb on - strand, within ABID97_RS04675 at 975.582 kb on - strand, within ABID97_RS04675 at 975.582 kb on - strand, within ABID97_RS04675 at 975.983 kb on + strand at 975.983 kb on + strand at 975.983 kb on + strand at 975.983 kb on + strand at 975.983 kb on + strand at 975.983 kb on + strand at 975.983 kb on + strand at 975.983 kb on + strand at 975.984 kb on - strand at 975.984 kb on - strand at 975.984 kb on - strand at 975.984 kb on - strand at 976.476 kb on + strand at 976.487 kb on - strand at 976.487 kb on - strand at 976.488 kb on + strand at 976.508 kb on + strand at 977.372 kb on + strand, within ABID97_RS04685 at 977.372 kb on + strand, within ABID97_RS04685 at 977.564 kb on + strand, within ABID97_RS04690 at 977.564 kb on + strand, within ABID97_RS04690 at 977.564 kb on + strand, within ABID97_RS04690 at 977.565 kb on - strand, within ABID97_RS04690 at 977.744 kb on + strand, within ABID97_RS04690 at 977.744 kb on + strand, within ABID97_RS04690 at 977.745 kb on - strand, within ABID97_RS04690 at 977.963 kb on + strand, within ABID97_RS04690 at 978.101 kb on - strand at 978.170 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 975,581 + ABID97_RS04675 0.65 +0.1 975,581 + ABID97_RS04675 0.65 +0.8 975,581 + ABID97_RS04675 0.65 -0.2 975,581 + ABID97_RS04675 0.65 +0.0 975,582 - ABID97_RS04675 0.65 -0.2 975,582 - ABID97_RS04675 0.65 +0.4 975,582 - ABID97_RS04675 0.65 +1.2 975,582 - ABID97_RS04675 0.65 +0.2 975,582 - ABID97_RS04675 0.65 -0.4 975,983 + +0.5 975,983 + +0.5 975,983 + +0.5 975,983 + +0.1 975,983 + -0.2 975,983 + +0.0 975,983 + +0.0 975,983 + +0.0 975,984 - -0.2 975,984 - +0.3 975,984 - -0.4 975,984 - -0.1 976,476 + -0.4 976,487 - -0.2 976,487 - -0.5 976,488 + +0.2 976,508 + +0.5 977,372 + ABID97_RS04685 0.89 -0.8 977,372 + ABID97_RS04685 0.89 -1.8 977,564 + ABID97_RS04690 0.10 -0.5 977,564 + ABID97_RS04690 0.10 -1.0 977,564 + ABID97_RS04690 0.10 +0.3 977,565 - ABID97_RS04690 0.10 -0.2 977,744 + ABID97_RS04690 0.45 -0.6 977,744 + ABID97_RS04690 0.45 -0.2 977,745 - ABID97_RS04690 0.45 +1.2 977,963 + ABID97_RS04690 0.88 -0.1 978,101 - +0.3 978,170 + +0.9
Or see this region's nucleotide sequence