Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04645 and ABID97_RS04650 are separated by 126 nucleotides ABID97_RS04650 and ABID97_RS04655 overlap by 10 nucleotides ABID97_RS04655 and ABID97_RS04660 overlap by 1 nucleotides
ABID97_RS04645: ABID97_RS04645 - MFS transporter, at 968,307 to 969,791
_RS04645
ABID97_RS04650: ABID97_RS04650 - putative zinc-binding metallopeptidase, at 969,918 to 971,312
_RS04650
ABID97_RS04655: ABID97_RS04655 - cysteine-rich CWC family protein, at 971,303 to 971,542
_RS04655
ABID97_RS04660: ABID97_RS04660 - 6-phosphofructokinase, at 971,542 to 972,798
_RS04660
Position (kb) 969
970
971
972 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 968.926 kb on + strand, within ABID97_RS04645 at 968.926 kb on + strand, within ABID97_RS04645 at 969.496 kb on + strand, within ABID97_RS04645 at 969.496 kb on + strand, within ABID97_RS04645 at 969.496 kb on + strand, within ABID97_RS04645 at 969.837 kb on + strand at 969.837 kb on + strand at 969.837 kb on + strand at 969.838 kb on - strand at 969.838 kb on - strand at 970.086 kb on + strand, within ABID97_RS04650 at 970.320 kb on + strand, within ABID97_RS04650 at 970.662 kb on + strand, within ABID97_RS04650 at 970.665 kb on + strand, within ABID97_RS04650 at 970.666 kb on - strand, within ABID97_RS04650 at 970.666 kb on - strand, within ABID97_RS04650 at 970.812 kb on + strand, within ABID97_RS04650 at 970.812 kb on + strand, within ABID97_RS04650 at 970.813 kb on - strand, within ABID97_RS04650 at 970.813 kb on - strand, within ABID97_RS04650 at 970.813 kb on - strand, within ABID97_RS04650 at 970.813 kb on - strand, within ABID97_RS04650 at 970.860 kb on + strand, within ABID97_RS04650 at 970.860 kb on + strand, within ABID97_RS04650 at 970.860 kb on + strand, within ABID97_RS04650 at 971.067 kb on + strand, within ABID97_RS04650 at 971.068 kb on - strand, within ABID97_RS04650 at 971.207 kb on + strand at 971.600 kb on + strand at 971.631 kb on - strand at 971.774 kb on + strand, within ABID97_RS04660 at 971.774 kb on + strand, within ABID97_RS04660 at 971.774 kb on + strand, within ABID97_RS04660 at 971.774 kb on + strand, within ABID97_RS04660 at 971.775 kb on - strand, within ABID97_RS04660 at 972.053 kb on + strand, within ABID97_RS04660
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 968,926 + ABID97_RS04645 0.42 -0.6 968,926 + ABID97_RS04645 0.42 -0.2 969,496 + ABID97_RS04645 0.80 -0.4 969,496 + ABID97_RS04645 0.80 +0.3 969,496 + ABID97_RS04645 0.80 +0.1 969,837 + -0.7 969,837 + -0.2 969,837 + +0.0 969,838 - +0.2 969,838 - -0.4 970,086 + ABID97_RS04650 0.12 +0.1 970,320 + ABID97_RS04650 0.29 -0.8 970,662 + ABID97_RS04650 0.53 -0.1 970,665 + ABID97_RS04650 0.54 -0.8 970,666 - ABID97_RS04650 0.54 +0.7 970,666 - ABID97_RS04650 0.54 -0.5 970,812 + ABID97_RS04650 0.64 +0.1 970,812 + ABID97_RS04650 0.64 +1.2 970,813 - ABID97_RS04650 0.64 -0.2 970,813 - ABID97_RS04650 0.64 -0.0 970,813 - ABID97_RS04650 0.64 +0.0 970,813 - ABID97_RS04650 0.64 +0.1 970,860 + ABID97_RS04650 0.68 +0.2 970,860 + ABID97_RS04650 0.68 -0.3 970,860 + ABID97_RS04650 0.68 -0.1 971,067 + ABID97_RS04650 0.82 +4.2 971,068 - ABID97_RS04650 0.82 +2.1 971,207 + +0.0 971,600 + +0.2 971,631 - +0.9 971,774 + ABID97_RS04660 0.18 -0.3 971,774 + ABID97_RS04660 0.18 +0.6 971,774 + ABID97_RS04660 0.18 +0.5 971,774 + ABID97_RS04660 0.18 +0.2 971,775 - ABID97_RS04660 0.19 -0.2 972,053 + ABID97_RS04660 0.41 +0.2
Or see this region's nucleotide sequence