Strain Fitness in Variovorax sp. OAS795 around ABID97_RS04555

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS04550 and ABID97_RS04555 are separated by 5 nucleotidesABID97_RS04555 and ABID97_RS04560 are separated by 146 nucleotides ABID97_RS04550: ABID97_RS04550 - 1,4-alpha-glucan branching protein GlgB, at 944,616 to 946,787 _RS04550 ABID97_RS04555: ABID97_RS04555 - alpha-amylase family glycosyl hydrolase, at 946,793 to 948,482 _RS04555 ABID97_RS04560: ABID97_RS04560 - NAD(P)/FAD-dependent oxidoreductase, at 948,629 to 950,107 _RS04560 Position (kb) 946 947 948 949Strain fitness (log2 ratio) -1 0 1at 945.871 kb on + strand, within ABID97_RS04550at 945.871 kb on + strand, within ABID97_RS04550at 945.872 kb on - strand, within ABID97_RS04550at 945.872 kb on - strand, within ABID97_RS04550at 945.964 kb on + strand, within ABID97_RS04550at 945.995 kb on - strand, within ABID97_RS04550at 946.048 kb on + strand, within ABID97_RS04550at 946.048 kb on + strand, within ABID97_RS04550at 946.049 kb on - strand, within ABID97_RS04550at 946.049 kb on - strand, within ABID97_RS04550at 946.049 kb on - strand, within ABID97_RS04550at 946.222 kb on + strand, within ABID97_RS04550at 946.222 kb on + strand, within ABID97_RS04550at 946.223 kb on - strand, within ABID97_RS04550at 946.846 kb on - strandat 947.358 kb on + strand, within ABID97_RS04555at 947.358 kb on + strand, within ABID97_RS04555at 947.358 kb on + strand, within ABID97_RS04555at 947.358 kb on + strand, within ABID97_RS04555at 947.359 kb on - strand, within ABID97_RS04555at 947.586 kb on + strand, within ABID97_RS04555at 947.587 kb on - strand, within ABID97_RS04555at 947.620 kb on - strand, within ABID97_RS04555at 947.742 kb on + strand, within ABID97_RS04555at 947.986 kb on - strand, within ABID97_RS04555at 947.986 kb on - strand, within ABID97_RS04555at 947.986 kb on - strand, within ABID97_RS04555at 947.988 kb on + strand, within ABID97_RS04555at 948.088 kb on + strand, within ABID97_RS04555at 948.088 kb on + strand, within ABID97_RS04555at 948.088 kb on + strand, within ABID97_RS04555at 948.089 kb on - strand, within ABID97_RS04555at 948.089 kb on - strand, within ABID97_RS04555at 948.089 kb on - strand, within ABID97_RS04555at 948.089 kb on - strand, within ABID97_RS04555at 948.089 kb on - strand, within ABID97_RS04555at 948.278 kb on - strand, within ABID97_RS04555at 948.571 kb on + strandat 948.571 kb on + strandat 948.572 kb on - strandat 948.572 kb on - strandat 949.055 kb on + strand, within ABID97_RS04560at 949.055 kb on + strand, within ABID97_RS04560at 949.055 kb on + strand, within ABID97_RS04560at 949.056 kb on - strand, within ABID97_RS04560at 949.056 kb on - strand, within ABID97_RS04560at 949.304 kb on + strand, within ABID97_RS04560at 949.304 kb on + strand, within ABID97_RS04560at 949.305 kb on - strand, within ABID97_RS04560at 949.305 kb on - strand, within ABID97_RS04560

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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945,871 + ABID97_RS04550 0.58 +0.3
945,871 + ABID97_RS04550 0.58 +0.2
945,872 - ABID97_RS04550 0.58 -0.0
945,872 - ABID97_RS04550 0.58 -0.4
945,964 + ABID97_RS04550 0.62 -0.3
945,995 - ABID97_RS04550 0.63 -0.2
946,048 + ABID97_RS04550 0.66 -0.6
946,048 + ABID97_RS04550 0.66 +0.3
946,049 - ABID97_RS04550 0.66 -0.7
946,049 - ABID97_RS04550 0.66 -0.2
946,049 - ABID97_RS04550 0.66 -0.4
946,222 + ABID97_RS04550 0.74 +0.1
946,222 + ABID97_RS04550 0.74 -0.1
946,223 - ABID97_RS04550 0.74 -0.6
946,846 - +0.5
947,358 + ABID97_RS04555 0.33 -0.8
947,358 + ABID97_RS04555 0.33 +1.5
947,358 + ABID97_RS04555 0.33 +0.3
947,358 + ABID97_RS04555 0.33 -0.8
947,359 - ABID97_RS04555 0.33 -1.6
947,586 + ABID97_RS04555 0.47 +0.2
947,587 - ABID97_RS04555 0.47 -0.6
947,620 - ABID97_RS04555 0.49 +0.7
947,742 + ABID97_RS04555 0.56 +1.4
947,986 - ABID97_RS04555 0.71 -1.1
947,986 - ABID97_RS04555 0.71 +0.2
947,986 - ABID97_RS04555 0.71 +0.2
947,988 + ABID97_RS04555 0.71 +0.1
948,088 + ABID97_RS04555 0.77 +0.1
948,088 + ABID97_RS04555 0.77 +0.4
948,088 + ABID97_RS04555 0.77 -0.1
948,089 - ABID97_RS04555 0.77 +0.2
948,089 - ABID97_RS04555 0.77 +0.3
948,089 - ABID97_RS04555 0.77 +0.4
948,089 - ABID97_RS04555 0.77 +0.4
948,089 - ABID97_RS04555 0.77 -0.3
948,278 - ABID97_RS04555 0.88 -0.4
948,571 + +0.1
948,571 + +0.3
948,572 - +1.4
948,572 - +1.0
949,055 + ABID97_RS04560 0.29 +0.1
949,055 + ABID97_RS04560 0.29 -0.9
949,055 + ABID97_RS04560 0.29 +0.6
949,056 - ABID97_RS04560 0.29 +1.3
949,056 - ABID97_RS04560 0.29 +1.5
949,304 + ABID97_RS04560 0.46 +0.2
949,304 + ABID97_RS04560 0.46 +0.5
949,305 - ABID97_RS04560 0.46 +1.2
949,305 - ABID97_RS04560 0.46 +0.6

Or see this region's nucleotide sequence