Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04055 and ABID97_RS04060 are separated by 204 nucleotides ABID97_RS04060 and ABID97_RS04065 are separated by 9 nucleotides ABID97_RS04065 and ABID97_RS04070 are separated by 267 nucleotides
ABID97_RS04055: ABID97_RS04055 - ABC transporter ATP-binding protein, at 831,521 to 832,609
_RS04055
ABID97_RS04060: ABID97_RS04060 - IclR family transcriptional regulator, at 832,814 to 833,672
_RS04060
ABID97_RS04065: ABID97_RS04065 - hypothetical protein, at 833,682 to 834,182
_RS04065
ABID97_RS04070: ABID97_RS04070 - aldehyde dehydrogenase family protein, at 834,450 to 835,988
_RS04070
Position (kb) 832
833
834 Strain fitness (log2 ratio) -1
0
1 at 831.945 kb on + strand, within ABID97_RS04055 at 831.945 kb on + strand, within ABID97_RS04055 at 831.945 kb on + strand, within ABID97_RS04055 at 831.945 kb on + strand, within ABID97_RS04055 at 831.946 kb on - strand, within ABID97_RS04055 at 832.359 kb on + strand, within ABID97_RS04055 at 832.360 kb on - strand, within ABID97_RS04055 at 832.573 kb on - strand at 832.598 kb on + strand at 832.692 kb on + strand at 832.723 kb on + strand at 832.744 kb on + strand at 832.771 kb on - strand at 833.329 kb on - strand, within ABID97_RS04060 at 833.337 kb on + strand, within ABID97_RS04060 at 833.338 kb on - strand, within ABID97_RS04060 at 833.338 kb on - strand, within ABID97_RS04060 at 833.349 kb on + strand, within ABID97_RS04060 at 833.350 kb on - strand, within ABID97_RS04060 at 833.350 kb on - strand, within ABID97_RS04060 at 833.350 kb on - strand, within ABID97_RS04060 at 834.160 kb on + strand at 834.160 kb on + strand at 834.161 kb on - strand at 834.389 kb on + strand at 834.389 kb on + strand at 834.389 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 831,945 + ABID97_RS04055 0.39 +0.3 831,945 + ABID97_RS04055 0.39 -0.4 831,945 + ABID97_RS04055 0.39 -0.2 831,945 + ABID97_RS04055 0.39 -0.1 831,946 - ABID97_RS04055 0.39 -0.0 832,359 + ABID97_RS04055 0.77 +0.5 832,360 - ABID97_RS04055 0.77 -0.3 832,573 - +0.1 832,598 + +1.2 832,692 + +0.1 832,723 + +0.4 832,744 + +1.4 832,771 - +0.2 833,329 - ABID97_RS04060 0.60 +0.0 833,337 + ABID97_RS04060 0.61 -0.4 833,338 - ABID97_RS04060 0.61 -0.3 833,338 - ABID97_RS04060 0.61 +0.7 833,349 + ABID97_RS04060 0.62 +0.2 833,350 - ABID97_RS04060 0.62 +0.7 833,350 - ABID97_RS04060 0.62 +0.3 833,350 - ABID97_RS04060 0.62 -0.5 834,160 + -0.2 834,160 + -0.0 834,161 - -0.9 834,389 + -0.5 834,389 + +0.6 834,389 + +0.4
Or see this region's nucleotide sequence