Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03530 and ABID97_RS03535 are separated by 709 nucleotides ABID97_RS03535 and ABID97_RS03540 overlap by 4 nucleotides ABID97_RS03540 and ABID97_RS03545 are separated by 48 nucleotides
ABID97_RS03530: ABID97_RS03530 - ABC transporter permease, at 719,654 to 721,576
_RS03530
ABID97_RS03535: ABID97_RS03535 - ABC transporter ATP-binding protein, at 722,286 to 723,089
_RS03535
ABID97_RS03540: ABID97_RS03540 - ABC transporter ATP-binding protein, at 723,086 to 723,820
_RS03540
ABID97_RS03545: ABID97_RS03545 - bifunctional nicotinamidase/pyrazinamidase, at 723,869 to 724,591
_RS03545
Position (kb) 722
723
724 Strain fitness (log2 ratio) -2
-1
0
1
2 at 721.428 kb on - strand at 722.302 kb on + strand at 722.302 kb on + strand at 722.311 kb on + strand at 722.311 kb on + strand at 722.312 kb on - strand at 722.312 kb on - strand at 723.009 kb on + strand at 723.009 kb on + strand at 723.009 kb on + strand at 723.009 kb on + strand at 723.009 kb on + strand at 723.010 kb on - strand at 723.155 kb on + strand at 723.575 kb on + strand, within ABID97_RS03540 at 723.575 kb on + strand, within ABID97_RS03540 at 723.728 kb on + strand, within ABID97_RS03540 at 723.728 kb on + strand, within ABID97_RS03540 at 723.729 kb on - strand, within ABID97_RS03540 at 723.819 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 721,428 - -0.3 722,302 + +0.8 722,302 + +0.2 722,311 + -0.8 722,311 + +0.1 722,312 - +0.7 722,312 - +2.0 723,009 + +0.1 723,009 + -0.1 723,009 + +1.2 723,009 + -0.0 723,009 + +0.7 723,010 - -1.1 723,155 + +0.1 723,575 + ABID97_RS03540 0.67 -2.0 723,575 + ABID97_RS03540 0.67 -0.1 723,728 + ABID97_RS03540 0.87 -0.2 723,728 + ABID97_RS03540 0.87 +0.3 723,729 - ABID97_RS03540 0.87 -0.3 723,819 - +0.4
Or see this region's nucleotide sequence